Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AR383_RS08755 Genome accession   NZ_CP013021
Coordinates   1879537..1880415 (+) Length   292 a.a.
NCBI ID   WP_055732787.1    Uniprot ID   -
Organism   Agarivorans gilvus strain WH0801     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1874537..1885415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR383_RS08735 nadC 1874948..1875790 (+) 843 WP_055732783.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AR383_RS22010 - 1876031..1876483 (+) 453 WP_055732784.1 pilin -
  AR383_RS08745 pilB 1876491..1878197 (+) 1707 WP_055732785.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AR383_RS08750 pilC 1878284..1879534 (+) 1251 WP_055732786.1 type II secretion system F family protein Machinery gene
  AR383_RS08755 pilD 1879537..1880415 (+) 879 WP_055732787.1 prepilin peptidase Machinery gene
  AR383_RS08760 coaE 1880415..1881017 (+) 603 WP_055732788.1 dephospho-CoA kinase -
  AR383_RS08765 zapD 1881076..1881816 (+) 741 WP_055732789.1 cell division protein ZapD -
  AR383_RS08770 yacG 1881816..1882016 (+) 201 WP_055732790.1 DNA gyrase inhibitor YacG -
  AR383_RS08775 mutT 1882013..1882423 (-) 411 WP_055732791.1 8-oxo-dGTP diphosphatase MutT -
  AR383_RS08780 secA 1882488..1885205 (-) 2718 WP_055732792.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32372.63 Da        Isoelectric Point: 7.7534

>NTDB_id=159304 AR383_RS08755 WP_055732787.1 1879537..1880415(+) (pilD) [Agarivorans gilvus strain WH0801]
MHSFIELYPATALGFCLLVALCIGSFLNVVIHRLPIMLQRQWRDECRVFLADELKASESTEPGVYNLMLPRSACPHCGSL
IKAWQNIPVISWLALRGKCANCKSPISIRYPLVEMATALLTLACWWQFGFTLSFIFSNLFCIILLCLSLIDLDSMLLPDQ
LTLPTLWLGLLLNINASFVPLSDAVIGAALGYSLLWALYWLFKLLTGKEGMGYGDFKLLAMIGAWFGWQALPLTILLSSF
AGALIGISLIALGKRQQSQAIPFGPYLALGGVVYLFFGAQLHSWYFSYLGLS

Nucleotide


Download         Length: 879 bp        

>NTDB_id=159304 AR383_RS08755 WP_055732787.1 1879537..1880415(+) (pilD) [Agarivorans gilvus strain WH0801]
ATGCACAGTTTTATCGAACTCTACCCAGCCACTGCGCTGGGTTTCTGCTTATTAGTGGCGCTCTGTATCGGCTCTTTTCT
TAATGTAGTGATTCACCGCTTACCCATAATGTTACAGCGCCAGTGGCGTGATGAATGCCGAGTGTTTTTGGCCGATGAGT
TAAAAGCCAGCGAAAGCACCGAGCCAGGCGTTTATAACTTAATGCTGCCTCGCTCGGCCTGCCCCCACTGCGGCAGCTTG
ATCAAAGCTTGGCAAAACATTCCGGTAATCAGCTGGTTAGCGCTGCGCGGTAAGTGCGCCAATTGCAAAAGCCCCATCAG
CATTCGTTATCCTTTAGTGGAGATGGCAACCGCCTTATTGACCTTGGCGTGTTGGTGGCAGTTTGGCTTTACCCTTAGCT
TTATATTTAGCAACCTATTTTGCATCATTTTACTGTGCTTAAGTTTAATCGACTTAGACAGTATGTTATTGCCCGACCAA
CTCACCCTACCCACGCTGTGGCTCGGTTTACTGCTCAATATTAATGCCAGCTTTGTTCCGCTCAGCGATGCGGTCATCGG
TGCGGCGCTGGGTTATAGCCTATTATGGGCTCTCTATTGGCTGTTTAAGCTACTAACCGGCAAAGAAGGCATGGGTTATG
GCGACTTCAAGTTGCTGGCCATGATCGGCGCATGGTTTGGCTGGCAAGCCTTACCGCTTACTATTTTGCTCTCTTCTTTC
GCTGGCGCCTTAATCGGCATTAGTCTTATCGCTCTGGGTAAGCGCCAACAAAGTCAAGCCATACCCTTTGGCCCCTATTT
AGCTCTAGGCGGTGTAGTCTATCTATTTTTTGGTGCGCAGCTACATAGCTGGTATTTCTCCTACCTAGGGCTTAGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.206

93.151

0.486
  pilD Vibrio campbellii strain DS40M4

49.648

97.26

0.483
  pilD Acinetobacter baumannii D1279779

46.316

97.603

0.452
  pilD Acinetobacter nosocomialis M2

45.965

97.603

0.449
  pilD Neisseria gonorrhoeae MS11

44.322

93.493

0.414

Multiple sequence alignment