Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAST39_RS05260 | Genome accession | NZ_CP012970 |
| Coordinates | 1068455..1068883 (+) | Length | 142 a.a. |
| NCBI ID | WP_000934385.1 | Uniprot ID | A0A2K0CLZ8 |
| Organism | Staphylococcus aureus strain ST20130939 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1055679..1103918 | 1068455..1068883 | within | 0 |
Gene organization within MGE regions
Location: 1055679..1103918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAST39_RS05140 (SAST39_03732) | - | 1055679..1056605 (-) | 927 | WP_000757565.1 | glycerophosphodiester phosphodiesterase | - |
| SAST39_RS05145 (SAST39_02893) | - | 1056844..1057098 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| SAST39_RS05150 (SAST39_01054) | - | 1057101..1057490 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| SAST39_RS05155 (SAST39_01055) | rsmD | 1057560..1058102 (+) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| SAST39_RS05160 (SAST39_01056) | coaD | 1058104..1058586 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| SAST39_RS05165 (SAST39_01057) | - | 1058648..1059787 (-) | 1140 | WP_000843616.1 | nucleotidyltransferase | - |
| SAST39_RS05170 (SAST39_01058) | - | 1059914..1060471 (+) | 558 | WP_000872155.1 | YceD family protein | - |
| SAST39_RS05180 (SAST39_01059) | rpmF | 1060551..1060724 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| SAST39_RS05185 (SAST39_01060) | - | 1060841..1062226 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| SAST39_RS05190 (SAST39_01061) | - | 1062335..1062514 (+) | 180 | WP_000337827.1 | hypothetical protein | - |
| SAST39_RS05195 (SAST39_01062) | - | 1062494..1063426 (-) | 933 | WP_000392183.1 | hypothetical protein | - |
| SAST39_RS05200 (SAST39_01063) | - | 1063458..1063922 (-) | 465 | WP_000525007.1 | hypothetical protein | - |
| SAST39_RS05205 (SAST39_03733) | - | 1063935..1064249 (-) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| SAST39_RS05210 (SAST39_02894) | - | 1064401..1064637 (+) | 237 | WP_001121116.1 | helix-turn-helix domain-containing protein | - |
| SAST39_RS05215 (SAST39_01066) | - | 1064651..1064830 (+) | 180 | WP_000438352.1 | hypothetical protein | - |
| SAST39_RS05220 (SAST39_01067) | - | 1064931..1065413 (-) | 483 | WP_000394410.1 | hypothetical protein | - |
| SAST39_RS05225 (SAST39_01068) | - | 1065473..1066264 (+) | 792 | WP_001148563.1 | phage antirepressor | - |
| SAST39_RS05230 (SAST39_01069) | tscA | 1066265..1066489 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| SAST39_RS14620 (SAST39_03174) | - | 1066529..1066705 (+) | 177 | WP_190362524.1 | hypothetical protein | - |
| SAST39_RS05235 (SAST39_01071) | - | 1066680..1066910 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| SAST39_RS14670 (SAST39_04290) | - | 1066960..1067097 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| SAST39_RS05240 (SAST39_01073) | - | 1067090..1067251 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| SAST39_RS05245 (SAST39_02895) | - | 1067348..1067608 (+) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| SAST39_RS05250 (SAST39_03175) | - | 1067618..1067839 (+) | 222 | WP_000815402.1 | DUF2483 family protein | - |
| SAST39_RS05255 (SAST39_01076) | - | 1067832..1068455 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| SAST39_RS05260 (SAST39_01077) | ssbA | 1068455..1068883 (+) | 429 | WP_000934385.1 | single-stranded DNA-binding protein | Machinery gene |
| SAST39_RS05265 (SAST39_01078) | - | 1068897..1069565 (+) | 669 | WP_001124437.1 | putative HNHc nuclease | - |
| SAST39_RS05270 (SAST39_03176) | - | 1069751..1070161 (-) | 411 | WP_000429731.1 | hypothetical protein | - |
| SAST39_RS05275 (SAST39_01080) | - | 1070223..1070954 (+) | 732 | WP_000132051.1 | helix-turn-helix domain-containing protein | - |
| SAST39_RS05280 (SAST39_01081) | - | 1070967..1071752 (+) | 786 | WP_000443353.1 | ATP-binding protein | - |
| SAST39_RS05285 (SAST39_03177) | - | 1071749..1071907 (+) | 159 | WP_000628837.1 | hypothetical protein | - |
| SAST39_RS05290 (SAST39_03178) | - | 1071920..1072141 (+) | 222 | WP_015984512.1 | DUF3269 family protein | - |
| SAST39_RS05295 (SAST39_01083) | - | 1072151..1072555 (+) | 405 | WP_000049794.1 | DUF1064 domain-containing protein | - |
| SAST39_RS05300 (SAST39_01084) | - | 1072560..1072745 (+) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| SAST39_RS05305 (SAST39_01085) | - | 1072746..1073051 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| SAST39_RS05310 (SAST39_01086) | - | 1073179..1073535 (+) | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAST39_RS05315 (SAST39_02896) | - | 1073539..1073781 (+) | 243 | WP_015984514.1 | SAV1978 family virulence-associated passenger protein | - |
| SAST39_RS05320 (SAST39_01088) | - | 1073846..1074295 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| SAST39_RS05325 (SAST39_01089) | - | 1074292..1074657 (+) | 366 | WP_001624703.1 | hypothetical protein | - |
| SAST39_RS05330 (SAST39_03734) | - | 1074650..1074904 (+) | 255 | WP_017804684.1 | DUF1024 family protein | - |
| SAST39_RS05335 (SAST39_03735) | - | 1074891..1075061 (+) | 171 | WP_000714413.1 | hypothetical protein | - |
| SAST39_RS05340 (SAST39_01092) | - | 1075054..1075590 (+) | 537 | WP_015984517.1 | dUTPase | - |
| SAST39_RS05345 (SAST39_01093) | - | 1075627..1075821 (+) | 195 | WP_015984518.1 | DUF1381 domain-containing protein | - |
| SAST39_RS05350 (SAST39_03736) | - | 1075821..1076345 (+) | 525 | WP_015984519.1 | hypothetical protein | - |
| SAST39_RS05355 (SAST39_01095) | rinB | 1076392..1076565 (+) | 174 | WP_000595258.1 | transcriptional activator RinB | - |
| SAST39_RS05360 (SAST39_01096) | - | 1076566..1076712 (+) | 147 | WP_000990005.1 | hypothetical protein | - |
| SAST39_RS05365 (SAST39_01097) | - | 1076736..1077158 (+) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| SAST39_RS05370 (SAST39_04222) | - | 1077489..1077983 (+) | 495 | WP_000594088.1 | terminase small subunit | - |
| SAST39_RS05375 (SAST39_01099) | - | 1077976..1079199 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| SAST39_RS05380 (SAST39_01100) | - | 1079196..1080620 (+) | 1425 | WP_000177422.1 | phage portal protein | - |
| SAST39_RS05385 (SAST39_04291) | - | 1080589..1081542 (+) | 954 | WP_015984520.1 | phage head morphogenesis protein | - |
| SAST39_RS05390 (SAST39_01102) | - | 1081544..1081750 (+) | 207 | WP_000346032.1 | hypothetical protein | - |
| SAST39_RS05395 (SAST39_01103) | - | 1081853..1082437 (+) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| SAST39_RS05400 (SAST39_01104) | - | 1082454..1083368 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| SAST39_RS14610 (SAST39_03183) | - | 1083380..1083523 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| SAST39_RS05405 (SAST39_03738) | - | 1083529..1083879 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| SAST39_RS05410 (SAST39_01106) | - | 1083891..1084226 (+) | 336 | WP_000483040.1 | phage head closure protein | - |
| SAST39_RS05415 (SAST39_01107) | - | 1084213..1084626 (+) | 414 | WP_001151330.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| SAST39_RS05420 (SAST39_03185) | - | 1084639..1085064 (+) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| SAST39_RS05425 (SAST39_01109) | - | 1085065..1085622 (+) | 558 | WP_000057582.1 | tail protein | - |
| SAST39_RS05430 (SAST39_01110) | - | 1085688..1086194 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| SAST39_RS05435 (SAST39_01111) | - | 1086239..1086523 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| SAST39_RS05440 (SAST39_03186) | - | 1086803..1089496 (+) | 2694 | Protein_1049 | terminase | - |
| SAST39_RS05445 (SAST39_03187) | - | 1089511..1090452 (+) | 942 | WP_062911908.1 | phage tail domain-containing protein | - |
| SAST39_RS05450 (SAST39_03188) | - | 1090463..1092346 (+) | 1884 | WP_062911909.1 | SGNH/GDSL hydrolase family protein | - |
| SAST39_RS05455 (SAST39_03189) | - | 1092359..1094257 (+) | 1899 | WP_062911910.1 | hypothetical protein | - |
| SAST39_RS05460 (SAST39_01116) | - | 1094257..1096080 (+) | 1824 | WP_023487056.1 | phage baseplate upper protein | - |
| SAST39_RS05465 (SAST39_01117) | - | 1096080..1096457 (+) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| SAST39_RS05470 (SAST39_01118) | - | 1096461..1096634 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| SAST39_RS05475 (SAST39_01119) | - | 1096675..1096974 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| SAST39_RS05480 (SAST39_03739) | - | 1097111..1098985 (+) | 1875 | WP_000524043.1 | glucosaminidase domain-containing protein | - |
| SAST39_RS05485 (SAST39_01122) | - | 1098998..1100170 (+) | 1173 | WP_062911911.1 | BppU family phage baseplate upper protein | - |
| SAST39_RS05490 (SAST39_01123) | - | 1100176..1100571 (+) | 396 | WP_000398878.1 | hypothetical protein | - |
| SAST39_RS05495 (SAST39_01124) | - | 1100627..1101064 (+) | 438 | WP_000354132.1 | phage holin | - |
| SAST39_RS05500 (SAST39_01125) | - | 1101045..1102490 (+) | 1446 | WP_001148137.1 | SH3 domain-containing protein | - |
| SAST39_RS05505 (SAST39_01126) | - | 1102879..1103466 (+) | 588 | WP_000448197.1 | hypothetical protein | - |
| SAST39_RS05510 (SAST39_03190) | - | 1103463..1103918 (+) | 456 | WP_000971220.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15872.58 Da Isoelectric Point: 8.4825
>NTDB_id=158687 SAST39_RS05260 WP_000934385.1 1068455..1068883(+) (ssbA) [Staphylococcus aureus strain ST20130939]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=158687 SAST39_RS05260 WP_000934385.1 1068455..1068883(+) (ssbA) [Staphylococcus aureus strain ST20130939]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.14 |
100 |
0.704 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.958 |
100 |
0.423 |
| ssbA | Streptococcus mutans UA159 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.437 |
100 |
0.394 |