Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AOY20_RS05260 Genome accession   NZ_CP012808
Coordinates   1136727..1138787 (+) Length   686 a.a.
NCBI ID   WP_054580891.1    Uniprot ID   A0A0N9VCL5
Organism   Acinetobacter equi strain 114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131727..1143787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS05240 (AOY20_05240) pilM 1133725..1134783 (+) 1059 WP_054580887.1 pilus assembly protein PilM Machinery gene
  AOY20_RS05245 (AOY20_05245) pilN 1134783..1135376 (+) 594 WP_054580888.1 PilN domain-containing protein Machinery gene
  AOY20_RS05250 (AOY20_05250) pilO 1135454..1136149 (+) 696 WP_054580889.1 type 4a pilus biogenesis protein PilO Machinery gene
  AOY20_RS05255 (AOY20_05255) pilP 1136152..1136667 (+) 516 WP_054580890.1 pilus assembly protein PilP Machinery gene
  AOY20_RS05260 (AOY20_05260) pilQ 1136727..1138787 (+) 2061 WP_054580891.1 type IV pilus secretin PilQ Machinery gene
  AOY20_RS05265 (AOY20_05265) aroK 1138825..1139367 (+) 543 WP_054580892.1 shikimate kinase AroK -
  AOY20_RS05270 (AOY20_05270) aroB 1139387..1140469 (+) 1083 WP_054580893.1 3-dehydroquinate synthase -
  AOY20_RS05275 (AOY20_05275) - 1140477..1141259 (+) 783 WP_054580894.1 hypothetical protein -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 75691.01 Da        Isoelectric Point: 5.3468

>NTDB_id=157756 AOY20_RS05260 WP_054580891.1 1136727..1138787(+) (pilQ) [Acinetobacter equi strain 114]
MNRLVRQWAMSTVSICAIQIANAQVDILNIVPVQTPEQGTEIRVTFNRLPPEPQAYQLEKPSRLILDFEQVKPNLTQNSV
AVLSSEVNSVDVAADDLRSRLTVNLAQAGQFTTRVEGNTFILKVNNTKNDTLPTQQKTIVNAHKGISNIDFQRGINGEGQ
VLIQLFDAHTPVDVQQQGTKVIVRFLGNKIPKNLAQRLNVNDFATPVTAVDAYNEGANGVIAIQTTGAYEYMAYQAEKQL
TISLKNFSTQKAASLAVPQPKYSGQKVSLDFQDIEVRRVLQLLADFANTNLVAADSVTGNISLRMKDVPWDQALDIILKA
KNLDKRQNGNVVWIAPVIELAKADEDQAKMLEQQIKIAPIQTEYIQLSYAKVEDIEKLITSNKTASNNNLSSSSDNKNNE
SLLSGRGSVSIDKRTNTLIVNDTEPFIVKIRRMVDLLDVPVKQVMVEARVVTADTNFTRELGVKWGLQRNNPSFPNTPGS
NVWGGNLSPSFDLGVNLAAENAAGTFSFGLLKISDYMLNLQLSAMQADGYGEVLSAPKVLTGDKQRAYILRGDQIPYRTW
SAETGVKTEFMDANLKLEVTPSITPDGKVQMSLKIEKDTVGQLTDAGYVLKTNELETNVLVDDGQTVVLGGIFDEAKTND
YEKVPFFGDLPVIGHLFKNSVKTNQQSELLIFITPRIVNDTLSRNH

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=157756 AOY20_RS05260 WP_054580891.1 1136727..1138787(+) (pilQ) [Acinetobacter equi strain 114]
ATGAATAGATTAGTTCGTCAGTGGGCAATGAGCACAGTTTCTATATGTGCAATACAAATAGCAAATGCTCAAGTTGATAT
TTTAAATATTGTGCCTGTTCAAACTCCTGAACAAGGAACAGAAATTCGAGTAACATTTAACAGATTACCACCTGAACCGC
AGGCATATCAGCTTGAAAAACCTTCTCGATTAATTTTAGATTTTGAACAGGTAAAGCCAAATTTAACGCAAAATTCCGTA
GCTGTTTTGAGTTCAGAAGTAAATTCGGTTGATGTTGCAGCAGATGATCTGCGTTCGCGTTTAACCGTTAATTTGGCACA
AGCAGGTCAATTTACTACACGTGTTGAAGGAAATACTTTTATCTTAAAGGTAAATAATACTAAAAATGATACATTACCTA
CTCAACAAAAAACGATTGTTAATGCACATAAAGGTATTTCAAATATTGATTTTCAACGTGGCATAAATGGTGAAGGACAG
GTATTAATTCAGTTATTTGATGCTCATACACCTGTTGATGTACAGCAACAAGGTACGAAAGTAATTGTCCGTTTCTTAGG
AAATAAAATACCTAAGAATCTGGCACAACGTTTAAATGTTAATGATTTTGCAACACCTGTAACGGCTGTTGATGCATATA
ACGAAGGTGCTAATGGCGTGATTGCTATACAGACAACGGGTGCATATGAATATATGGCTTATCAAGCTGAAAAACAGTTA
ACTATTAGTTTAAAAAATTTTTCTACTCAAAAAGCTGCATCATTAGCGGTACCTCAACCTAAATATTCAGGACAAAAGGT
TTCTTTAGATTTTCAAGATATTGAAGTTCGCCGTGTACTACAACTTTTAGCAGACTTTGCAAATACCAATTTGGTTGCAG
CAGATAGTGTGACAGGAAATATTTCATTACGAATGAAAGATGTTCCTTGGGATCAGGCGTTAGATATCATCTTAAAAGCA
AAAAATTTAGATAAACGTCAAAATGGAAATGTAGTTTGGATTGCACCTGTTATAGAGTTGGCAAAAGCAGATGAAGATCA
GGCAAAAATGCTAGAACAACAAATAAAAATAGCACCAATTCAAACAGAATATATTCAACTTAGCTATGCCAAAGTTGAAG
ATATTGAAAAGTTAATTACATCAAATAAAACAGCAAGTAATAATAATTTATCTAGCTCAAGTGATAATAAAAATAATGAA
AGTTTATTGAGTGGTCGTGGAAGCGTGTCCATAGATAAACGGACCAATACTCTCATCGTGAATGATACAGAACCATTTAT
TGTAAAAATTCGTAGAATGGTCGATCTGTTAGATGTTCCAGTAAAGCAGGTGATGGTTGAAGCACGCGTTGTTACAGCAG
ATACTAATTTTACGCGTGAACTTGGCGTCAAATGGGGATTACAACGTAATAATCCATCATTTCCCAATACACCAGGTTCA
AATGTTTGGGGAGGAAATTTATCGCCTTCATTTGATTTAGGTGTCAATTTAGCTGCAGAAAATGCAGCAGGAACATTCAG
TTTTGGACTACTTAAAATTTCTGATTATATGTTGAATTTACAGTTAAGTGCTATGCAGGCAGATGGTTATGGAGAAGTAT
TGTCTGCACCGAAGGTACTCACAGGTGATAAACAAAGAGCTTATATTTTAAGAGGTGATCAAATTCCATATCGGACATGG
AGTGCAGAAACAGGGGTTAAAACAGAGTTTATGGATGCGAACTTAAAGTTAGAAGTCACCCCAAGCATTACGCCTGATGG
AAAAGTACAAATGTCATTAAAAATAGAAAAGGATACGGTTGGACAGCTTACAGATGCAGGTTATGTTTTAAAAACCAATG
AGTTGGAAACAAATGTTTTAGTAGATGATGGTCAAACAGTCGTACTTGGTGGGATTTTTGATGAAGCAAAAACGAATGAT
TATGAAAAAGTTCCATTCTTTGGTGATTTACCTGTAATTGGTCATTTATTTAAGAATAGTGTGAAGACAAATCAGCAATC
TGAGCTATTGATTTTTATAACGCCAAGAATAGTTAATGACACTCTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(524-678)

Secretin and TonB N terminus short domain (STN)

(293-336)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(363-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9VCL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

56.534

100

0.599
  pilQ Acinetobacter baumannii strain A118

56.396

100

0.598
  comQ Acinetobacter baylyi ADP1

53.566

100

0.558
  pilQ Pseudomonas aeruginosa PAK

37.791

100

0.379
  pilQ Legionella pneumophila strain Lp02

36.921

97.522

0.36
  pilQ Legionella pneumophila strain ERS1305867

36.921

97.522

0.36
  pilQ Neisseria gonorrhoeae strain FA1090

33.975

100

0.36

Multiple sequence alignment