Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   AOY20_RS05255 Genome accession   NZ_CP012808
Coordinates   1136152..1136667 (+) Length   171 a.a.
NCBI ID   WP_054580890.1    Uniprot ID   A0A0N9VXZ2
Organism   Acinetobacter equi strain 114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1131152..1141667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS05240 (AOY20_05240) pilM 1133725..1134783 (+) 1059 WP_054580887.1 pilus assembly protein PilM Machinery gene
  AOY20_RS05245 (AOY20_05245) pilN 1134783..1135376 (+) 594 WP_054580888.1 PilN domain-containing protein Machinery gene
  AOY20_RS05250 (AOY20_05250) pilO 1135454..1136149 (+) 696 WP_054580889.1 type 4a pilus biogenesis protein PilO Machinery gene
  AOY20_RS05255 (AOY20_05255) pilP 1136152..1136667 (+) 516 WP_054580890.1 pilus assembly protein PilP Machinery gene
  AOY20_RS05260 (AOY20_05260) pilQ 1136727..1138787 (+) 2061 WP_054580891.1 type IV pilus secretin PilQ Machinery gene
  AOY20_RS05265 (AOY20_05265) aroK 1138825..1139367 (+) 543 WP_054580892.1 shikimate kinase AroK -
  AOY20_RS05270 (AOY20_05270) aroB 1139387..1140469 (+) 1083 WP_054580893.1 3-dehydroquinate synthase -
  AOY20_RS05275 (AOY20_05275) - 1140477..1141259 (+) 783 WP_054580894.1 hypothetical protein -

Sequence


Protein


Download         Length: 171 a.a.        Molecular weight: 19402.50 Da        Isoelectric Point: 7.3562

>NTDB_id=157755 AOY20_RS05255 WP_054580890.1 1136152..1136667(+) (pilP) [Acinetobacter equi strain 114]
MKKLFFFSILFMIGCDSRIDFVNHQMNEIRREPPLPIESPPVFEPAPTYEYAAHQLRSPFIPSSLSEELKLMGGRKVYPN
LSRPQHPLESYALETLSMKGSLKNKNGKILALIQTPDQEIEQVQVGSYMGLNHGRVREVTPTKIDLIEIIPDGREGYVER
PRSLVLVGVTP

Nucleotide


Download         Length: 516 bp        

>NTDB_id=157755 AOY20_RS05255 WP_054580890.1 1136152..1136667(+) (pilP) [Acinetobacter equi strain 114]
ATGAAAAAATTATTTTTCTTTTCGATCTTATTTATGATTGGGTGCGATTCTCGAATTGATTTTGTAAATCATCAAATGAA
TGAGATTAGGCGTGAACCACCTTTACCTATTGAGTCACCTCCTGTTTTTGAGCCAGCACCAACTTATGAATACGCGGCAC
ATCAATTACGTAGTCCATTTATTCCGAGTTCGTTATCAGAAGAACTAAAACTAATGGGAGGAAGGAAGGTTTATCCAAAC
TTATCTCGTCCACAACATCCATTAGAAAGTTATGCGTTAGAAACTTTAAGTATGAAAGGTAGTTTAAAAAATAAAAATGG
AAAAATATTAGCGCTGATTCAAACTCCTGATCAAGAAATTGAACAAGTTCAGGTAGGAAGTTATATGGGATTGAATCATG
GGCGAGTAAGAGAAGTAACACCGACAAAAATTGATTTAATAGAAATTATTCCAGATGGTCGAGAAGGATATGTTGAGCGT
CCTCGGAGTTTAGTTTTAGTAGGGGTAACACCTTAA

Domains


Predicted by InterproScan.

(24-166)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0N9VXZ2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

64.286

98.246

0.632

  comL Acinetobacter baylyi ADP1

63.804

95.322

0.608


Multiple sequence alignment