Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SanJ4211_RS01450 Genome accession   NZ_CP012805
Coordinates   269008..269403 (+) Length   131 a.a.
NCBI ID   WP_057489562.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 264008..274403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS01420 (SanJ4211_0256) - 264395..265699 (+) 1305 WP_003026955.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SanJ4211_RS01425 (SanJ4211_0257) - 265877..266437 (+) 561 WP_021001242.1 folate family ECF transporter S component -
  SanJ4211_RS01430 (SanJ4211_0258c) pepA 266500..267564 (-) 1065 WP_021001243.1 glutamyl aminopeptidase -
  SanJ4211_RS01435 (SanJ4211_0259) - 267684..267971 (+) 288 WP_003026945.1 DUF4651 domain-containing protein -
  SanJ4211_RS01440 (SanJ4211_0260) - 267968..268285 (+) 318 WP_003026942.1 thioredoxin family protein -
  SanJ4211_RS01445 (SanJ4211_0261) ytpR 268302..268928 (+) 627 WP_003026939.1 YtpR family tRNA-binding protein -
  SanJ4211_RS01450 (SanJ4211_0262) ssbB/cilA 269008..269403 (+) 396 WP_057489562.1 single-stranded DNA-binding protein Machinery gene
  SanJ4211_RS01455 (SanJ4211_0263) - 269700..270686 (+) 987 WP_003026932.1 sugar ABC transporter substrate-binding protein -
  SanJ4211_RS01460 (SanJ4211_0264) - 270686..271999 (+) 1314 WP_021001244.1 sensor histidine kinase -
  SanJ4211_RS01465 (SanJ4211_0265) - 271992..272675 (+) 684 WP_003030916.1 response regulator transcription factor -
  SanJ4211_RS01470 (SanJ4211_0266) - 272672..273958 (+) 1287 WP_041783988.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14728.64 Da        Isoelectric Point: 5.9381

>NTDB_id=157679 SanJ4211_RS01450 WP_057489562.1 269008..269403(+) (ssbB/cilA) [Streptococcus anginosus strain J4211]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFINVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDNVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=157679 SanJ4211_RS01450 WP_057489562.1 269008..269403(+) (ssbB/cilA) [Streptococcus anginosus strain J4211]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACCCTTGCTGTCAATCGTCGCTACAAAGGGCAAAATGGCGAACGAGAAGCAGACTTCATCAATGTCGTTGTTT
GGGGCAAGTTAGCTGAAACCTTAGCAAGTTATGCAAGTAAAGGTAGCTTGATTTCGCTAGATGGTGAACTTCGCACTCGC
CGCTATGAGAAGGACAATGTTACCCACTATGTTACAGAAGTACTTTGCAATGGCTTTCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCTGGTGCAGATTTGGCAGACTTGGTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae D39

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae R6

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

82.443

100

0.824
  ssbB/cilA Streptococcus mitis SK321

82.443

100

0.824
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.068

90.076

0.397

Multiple sequence alignment