Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AN401_RS16200 Genome accession   NZ_CP012621
Coordinates   3438509..3439735 (+) Length   408 a.a.
NCBI ID   WP_094041121.1    Uniprot ID   A0A231MUV0
Organism   Zobellella denitrificans strain F13-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3433509..3444735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN401_RS16175 (AN401_15940) ampD 3433644..3434189 (-) 546 WP_096779922.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AN401_RS16180 (AN401_15945) - 3434273..3434782 (+) 510 WP_198401753.1 TIGR02281 family clan AA aspartic protease -
  AN401_RS16185 (AN401_15950) nadC 3434840..3435682 (+) 843 WP_096780394.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AN401_RS16190 (AN401_15955) - 3436303..3436746 (+) 444 WP_096779923.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AN401_RS16195 (AN401_15960) pilB 3436759..3438474 (+) 1716 WP_096779924.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AN401_RS16200 (AN401_15965) pilC 3438509..3439735 (+) 1227 WP_094041121.1 type II secretion system F family protein Machinery gene
  AN401_RS16205 (AN401_15970) pilD 3439793..3440647 (+) 855 WP_096779925.1 A24 family peptidase Machinery gene
  AN401_RS16210 (AN401_15975) coaE 3440644..3441249 (+) 606 WP_096779926.1 dephospho-CoA kinase -
  AN401_RS16215 (AN401_15980) trmB 3441325..3442041 (-) 717 WP_096779927.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AN401_RS16220 (AN401_15985) - 3442195..3443373 (-) 1179 WP_094040173.1 PLP-dependent aminotransferase family protein -
  AN401_RS16225 (AN401_15990) mutY 3443538..3444599 (+) 1062 WP_096779928.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45217.35 Da        Isoelectric Point: 10.1837

>NTDB_id=155794 AN401_RS16200 WP_094041121.1 3438509..3439735(+) (pilC) [Zobellella denitrificans strain F13-1]
MATAKNYKVHPYKWEGVNRRGQKVSGFIQAVNIQAVKRELQRQGVNATSVRRRSQSILARYRDAIKPMDIAVITRQIATM
LGAGVPLVQTLQIISRSYQKSSIRELTGIIASDVEGGTPLSEALKKFPRQFDALYCDLVHSGEQTGALEHIFDQIAIYRE
KAEALKSKIKKAMFYPAMVILVAIAVTSILLLFVIPQFEEIFAGFGATLPAFTQLVINLSRWMQDTWLYLLAGLVATVFL
YVRAWRLSQKVRDATDRFILRIPVVGMILHKAALARFARTLATTFSAGIPLVEGLVSSAGASGNVVYRRAIMQMRNEVIA
GMQMNLAMRSTQLFPDMVVQMVMIGEESGAIDDMMNKVASIYEREVDDAVDGLTSLIEPIIMVVLGILVGGLVIAMYLPI
FNLGSVIR

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=155794 AN401_RS16200 WP_094041121.1 3438509..3439735(+) (pilC) [Zobellella denitrificans strain F13-1]
ATGGCAACGGCAAAGAACTACAAGGTCCACCCCTACAAGTGGGAAGGCGTCAACCGGCGCGGGCAGAAGGTGTCCGGCTT
TATCCAGGCGGTAAACATCCAGGCGGTCAAGCGCGAGCTGCAACGCCAGGGAGTCAACGCCACCAGCGTGCGCCGCCGCA
GCCAGAGCATCCTGGCCCGTTACCGGGATGCCATCAAGCCGATGGACATCGCCGTGATCACCCGCCAGATAGCCACCATG
CTGGGTGCCGGAGTGCCCCTGGTGCAGACCCTGCAGATCATCTCCCGCTCCTACCAAAAGAGCAGCATCCGCGAGCTGAC
CGGCATCATCGCCTCGGACGTGGAAGGGGGCACCCCGCTGTCGGAAGCCCTGAAAAAATTTCCCCGCCAGTTTGACGCGC
TTTACTGCGACCTGGTGCACTCGGGGGAGCAGACCGGGGCGCTGGAGCATATTTTCGACCAGATCGCCATCTACCGGGAG
AAGGCCGAGGCGCTCAAGTCCAAGATCAAGAAGGCCATGTTCTACCCGGCCATGGTGATACTGGTGGCCATAGCGGTCAC
CTCCATACTGCTGCTGTTCGTGATCCCCCAGTTCGAGGAGATCTTCGCCGGCTTCGGCGCCACCCTGCCCGCCTTTACCC
AACTGGTGATCAACCTGTCGCGCTGGATGCAGGATACCTGGCTCTATCTGCTGGCCGGCCTGGTCGCCACGGTGTTTCTC
TATGTGCGCGCCTGGCGCCTGTCCCAGAAGGTGCGCGACGCCACCGACCGCTTTATCCTGCGTATTCCCGTGGTGGGCAT
GATACTGCACAAGGCGGCCCTGGCCCGCTTTGCCCGCACCCTGGCCACCACCTTTTCCGCCGGTATTCCGCTGGTGGAAG
GCCTGGTCTCCTCGGCCGGCGCCTCCGGCAACGTGGTCTACCGCCGCGCCATCATGCAGATGCGCAACGAGGTCATCGCC
GGCATGCAGATGAACCTGGCCATGCGCTCCACCCAGCTGTTCCCCGACATGGTGGTGCAGATGGTGATGATCGGCGAGGA
ATCCGGCGCTATCGACGACATGATGAACAAGGTGGCCAGCATCTACGAGCGGGAGGTGGACGACGCCGTGGACGGCCTGA
CCAGCCTGATCGAGCCCATTATCATGGTGGTATTGGGGATACTGGTTGGCGGCCTGGTCATTGCCATGTATCTTCCCATC
TTCAACCTGGGTAGCGTGATCCGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A231MUV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.605

98.775

0.52
  pilC Acinetobacter baylyi ADP1

50.739

99.51

0.505
  pilC Acinetobacter baumannii D1279779

50

100

0.5
  pilC Legionella pneumophila strain ERS1305867

48.232

97.059

0.468
  pilC Vibrio cholerae strain A1552

46.437

99.755

0.463
  pilC Vibrio campbellii strain DS40M4

46.617

97.794

0.456
  pilG Neisseria meningitidis 44/76-A

41.935

98.775

0.414
  pilG Neisseria gonorrhoeae MS11

41.935

98.775

0.414
  pilC Thermus thermophilus HB27

38

98.039

0.373

Multiple sequence alignment