Detailed information NTG0155795

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AN401_RS16205
• Genome accession: NZ_CP012621
• Coordinates: 3439793..3440647 (+)
• Length: 284 a.a.
• NCBI ID: WP_096779925.1
• Uniprot ID: A0A291HSG8
• Organism: Zobellella denitrificans strain F13-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3434793..3445647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN401_RS16185 (AN401_15950)	nadC	3434840..3435682 (+)	843	WP_096780394.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AN401_RS16190 (AN401_15955)	-	3436303..3436746 (+)	444	WP_096779923.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AN401_RS16195 (AN401_15960)	pilB	3436759..3438474 (+)	1716	WP_096779924.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AN401_RS16200 (AN401_15965)	pilC	3438509..3439735 (+)	1227	WP_094041121.1	type II secretion system F family protein	Machinery gene
AN401_RS16205 (AN401_15970)	pilD	3439793..3440647 (+)	855	WP_096779925.1	A24 family peptidase	Machinery gene
AN401_RS16210 (AN401_15975)	coaE	3440644..3441249 (+)	606	WP_096779926.1	dephospho-CoA kinase	-
AN401_RS16215 (AN401_15980)	trmB	3441325..3442041 (-)	717	WP_096779927.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	-
AN401_RS16220 (AN401_15985)	-	3442195..3443373 (-)	1179	WP_094040173.1	PLP-dependent aminotransferase family protein	-
AN401_RS16225 (AN401_15990)	mutY	3443538..3444599 (+)	1062	WP_096779928.1	A/G-specific adenine glycosylase	-
AN401_RS16230 (AN401_15995)	-	3444596..3444871 (+)	276	WP_094040171.1	oxidative damage protection protein	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 31407.71 Da
• Isoelectric Point: 8.3792

>NTDB_id=155795 AN401_RS16205 WP_096779925.1 3439793..3440647(+) (pilD) [Zobellella denitrificans strain F13-1]
MAQLLDNTVLLYSLVMLVGLLVGSFLNVVIHRLPLMLKLEWERECAEFQGSPLPETAPFNLCRPRSRCPHCHHQLGVLDN
IPLLSWLWLRGRCRYCQAPIARRYPLVELASAALAGLALWRFGASPQLLAALVFSWVLLCMTLIDVDHLLLPDNLTLPLL
WLGLLLNINALFVPLASAVLGAAFGYGILWSLYWLFKLVTGKEGMGYGDFKLLAAIGAWFGWQSLLPVLLLASAAGAALG
LGLMALRRLGEDRVLPFGPALALGGWIYLLWGQPLMRIYWGVAL

Nucleotide

• Length: 855 bp

>NTDB_id=155795 AN401_RS16205 WP_096779925.1 3439793..3440647(+) (pilD) [Zobellella denitrificans strain F13-1]
ATGGCGCAACTGCTCGACAATACCGTTTTGCTGTATTCCCTGGTGATGCTGGTGGGCCTGCTGGTGGGCAGCTTCCTCAA
CGTGGTGATCCACCGCCTGCCGCTGATGCTGAAGCTGGAGTGGGAGCGGGAATGCGCCGAGTTCCAGGGCAGCCCCCTGC
CCGAAACCGCCCCCTTCAACCTGTGCCGGCCCCGCTCCCGTTGCCCCCATTGCCACCACCAGCTGGGGGTGCTCGACAAT
ATCCCGCTGCTGAGCTGGCTCTGGCTCAGGGGCCGTTGCCGCTACTGCCAGGCCCCCATCGCCAGGCGCTATCCGCTGGT
GGAGCTGGCCTCGGCGGCCCTGGCCGGGCTGGCCCTGTGGCGCTTCGGCGCCAGCCCCCAGCTGCTGGCGGCCCTGGTGT
TCAGCTGGGTGCTGCTGTGCATGACCCTGATCGACGTGGATCACCTGCTGCTGCCCGACAACCTCACCCTGCCGCTGCTG
TGGTTGGGACTGCTGCTCAATATCAATGCCCTCTTCGTGCCGCTGGCCAGCGCCGTGCTCGGTGCCGCCTTCGGCTACGG
CATACTGTGGAGCCTGTACTGGCTGTTTAAGCTCGTCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTGG
CGGCCATCGGCGCCTGGTTCGGCTGGCAGAGCCTGCTGCCGGTGCTGCTGCTGGCATCCGCCGCCGGCGCCGCCCTGGGC
CTGGGGCTGATGGCCCTGCGCCGACTGGGCGAAGACAGGGTGCTGCCCTTCGGCCCGGCGCTGGCCCTGGGAGGCTGGAT
TTACCTGCTCTGGGGGCAACCACTGATGCGGATTTACTGGGGAGTGGCGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (132-241)

3D structure

• AlphaFold DB: A0A291HSG8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.941	95.775	0.507
pilD	Vibrio campbellii strain DS40M4	50.362	97.183	0.489
pilD	Acinetobacter nosocomialis M2	45.23	99.648	0.451
pilD	Acinetobacter baumannii D1279779	44.523	99.648	0.444
pilD	Neisseria gonorrhoeae MS11	48.438	90.141	0.437