Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AMQ28_RS09735 Genome accession   NZ_CP012608
Coordinates   2052375..2054504 (+) Length   709 a.a.
NCBI ID   WP_171250371.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047375..2059504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS09715 (AMQ28_09720) pilM 2049356..2050417 (+) 1062 WP_053579417.1 pilus assembly protein PilM Machinery gene
  AMQ28_RS09720 (AMQ28_09725) pilN 2050417..2051046 (+) 630 WP_053579418.1 PilN domain-containing protein Machinery gene
  AMQ28_RS09725 (AMQ28_09730) comO 2051043..2051786 (+) 744 WP_053579419.1 type 4a pilus biogenesis protein PilO Machinery gene
  AMQ28_RS09730 (AMQ28_09735) pilP 2051786..2052313 (+) 528 WP_053579420.1 pilus assembly protein PilP Machinery gene
  AMQ28_RS09735 (AMQ28_09740) pilQ 2052375..2054504 (+) 2130 WP_171250371.1 type IV pilus secretin PilQ family protein Machinery gene
  AMQ28_RS09740 (AMQ28_09745) aroK 2054541..2055089 (+) 549 WP_053579422.1 shikimate kinase AroK -
  AMQ28_RS09745 (AMQ28_09750) aroB 2055107..2056192 (+) 1086 WP_053579423.1 3-dehydroquinate synthase -
  AMQ28_RS09750 (AMQ28_09755) - 2056196..2057065 (+) 870 WP_053579424.1 hypothetical protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76793.92 Da        Isoelectric Point: 5.2211

>NTDB_id=155768 AMQ28_RS09735 WP_171250371.1 2052375..2054504(+) (pilQ) [Acinetobacter sp. TTH0-4]
MNHLFRQFSMGAVAIAVMQVANAQVSITNIVPMQVAGQGTEIRVMFNGIPPQPQAYQLEQPSRLILDFDKAQQNLKQSTI
AVATKEANSVDVSSDAQRSRLTVNLADAGAFTTRMEGNTFILKINTVGNNNFSTQQVVAQNPTQGISNIGFQRGSQGEGQ
VVIDLLGSNTPVDVQQQGSKVVIRTLGNKVPTHLARRLNVNDFATPVSVVDAKNDGGNGVITIQTEGSYEYMAYQTDNKL
TISLKRPEDKNPFKPKAANSYTGKKISLDFQDIEVRRVLQLLADFTEINMVTADTVQGNITLRLKDVPWDQALDIILKTK
SLDKRRNGNVIWIAPVTELIKSEEEEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNSSNGSNRSSGSGADSLG
DSVGSLLSPRGTISTDPRTNTIIVNDTSVKIDQIRKMIDLLDVSVKQVMVEARIVRASTEFSKQMGVKWGILSQGINQNS
DLLVGGSDTTLWDLKTPDDDGKYTIQRPDNLNVDLGVTAPGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLT
ADKQPAKVASGTQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKIQMMLQIKNDSVGNPTPTGQLTINKNEINT
NVLVDNGETVVLGGIFEQTTANQQTKVPFLGDLPYIGRLFRKDVKSDNKSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=155768 AMQ28_RS09735 WP_171250371.1 2052375..2054504(+) (pilQ) [Acinetobacter sp. TTH0-4]
ATGAACCATTTGTTCCGTCAATTTTCTATGGGTGCTGTTGCAATTGCAGTCATGCAGGTTGCCAATGCTCAAGTCAGTAT
TACCAATATTGTTCCTATGCAAGTGGCAGGGCAAGGTACAGAAATACGTGTTATGTTCAATGGTATACCACCGCAACCAC
AAGCCTATCAGCTAGAACAACCTTCACGTTTAATATTGGATTTTGATAAAGCACAGCAAAATTTAAAACAAAGTACTATT
GCTGTAGCGACGAAAGAAGCCAATTCTGTTGATGTGAGTTCGGATGCGCAGCGTTCACGTTTAACAGTTAATTTAGCTGA
TGCGGGTGCATTTACCACGCGTATGGAAGGCAATACTTTTATTTTAAAAATTAATACAGTTGGGAATAATAATTTTAGTA
CTCAACAGGTGGTTGCCCAGAATCCAACACAAGGCATTTCAAATATTGGCTTTCAGCGTGGCAGTCAAGGTGAAGGTCAA
GTCGTGATTGATTTGCTGGGCAGCAATACGCCTGTCGATGTGCAACAACAAGGCAGTAAAGTAGTCATACGCACATTAGG
AAATAAAGTGCCGACACATTTGGCACGTCGTTTAAATGTGAATGATTTTGCCACGCCGGTTTCAGTTGTAGATGCAAAGA
ATGACGGTGGTAATGGTGTTATAACCATTCAAACTGAGGGTAGCTATGAATATATGGCCTACCAAACGGATAATAAACTC
ACCATTAGTTTGAAGCGTCCAGAAGATAAAAACCCCTTCAAACCTAAAGCTGCTAACAGTTATACAGGTAAAAAGATTTC
TTTAGATTTTCAAGATATTGAAGTACGTCGAGTACTACAGTTATTGGCGGATTTTACTGAAATCAATATGGTGACTGCTG
ATACAGTACAAGGCAATATTACCCTACGTTTAAAGGATGTTCCTTGGGATCAAGCCTTAGATATCATTTTAAAAACCAAG
AGCTTGGATAAACGTCGTAATGGAAATGTGATTTGGATTGCGCCTGTCACAGAATTGATTAAATCAGAAGAAGAAGAAGC
CAAAGCGATTGCGCAAAGCGTTAAACTTGCTCCACTACAAACAGAATATATTCAACTCAGTTATGCTAAAGCGGTTGATA
TTGAGAAACTCATTACCCAAGGTAAAAACTCTTCAAATGGATCGAATCGCTCTAGTGGTTCTGGAGCAGACTCTCTGGGG
GATAGTGTAGGAAGTTTACTCAGTCCACGAGGGACAATTTCAACTGATCCGCGAACCAATACGATTATTGTAAATGATAC
TTCGGTAAAAATTGATCAAATTCGTAAAATGATTGACTTGTTGGATGTGTCAGTAAAACAAGTGATGGTTGAGGCACGTA
TTGTGCGTGCTTCTACTGAGTTTAGTAAACAGATGGGGGTGAAGTGGGGAATTTTATCCCAAGGCATTAACCAAAATAGT
GATTTGTTAGTGGGTGGTAGTGATACGACTTTATGGGATTTAAAAACACCTGATGATGATGGTAAATATACCATTCAACG
TCCAGATAATTTAAATGTCGATTTAGGTGTAACAGCACCCGGTGCCAGTAAAATTGCTTTTGGTCTCATTAGTTTATCTG
ACTTTATGTTGGATTTGGAGCTTTCAGCACTGCAAGCTGATGGTTATGGGGAAGTCATTTCAACGCCAAAAGTGCTCACT
GCAGATAAACAACCTGCCAAAGTTGCTTCAGGTACACAAATTCCTTATCAATCTGCCGAAGGTGGTGGTGCAAATGCAGT
GTCTACCACAGAATTTATTGATGCAACCTTAAGTCTGGATGTCACCCCAAGTATTACCCCAGATGGCAAAATTCAAATGA
TGTTGCAGATTAAAAATGACTCCGTGGGCAATCCGACTCCTACAGGTCAATTAACGATTAATAAAAATGAAATTAACACC
AATGTTCTGGTGGATAATGGTGAGACTGTAGTCTTGGGCGGTATTTTTGAGCAAACCACTGCCAACCAACAAACCAAAGT
CCCGTTTTTGGGAGATTTACCTTATATTGGGCGTTTATTCCGTAAAGATGTAAAATCTGATAATAAGAGTGAGCTCTTGA
TTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-111)

Secretin and TonB N terminus short domain (STN)

(292-335)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-447)

Bacterial type II and III secretion system protein (Secretin)

(543-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.381

100

0.78
  pilQ Acinetobacter baumannii strain A118

76.243

100

0.779
  comQ Acinetobacter baylyi ADP1

74.053

100

0.745
  pilQ Pseudomonas aeruginosa PAK

40.227

99.577

0.401
  pilQ Legionella pneumophila strain ERS1305867

38.724

95.063

0.368
  pilQ Legionella pneumophila strain Lp02

38.724

95.063

0.368

Multiple sequence alignment