Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AMQ28_RS09725 Genome accession   NZ_CP012608
Coordinates   2051043..2051786 (+) Length   247 a.a.
NCBI ID   WP_053579419.1    Uniprot ID   A0A0M4HB95
Organism   Acinetobacter sp. TTH0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2046043..2056786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS09710 (AMQ28_09715) ponA 2046662..2049190 (-) 2529 WP_053579416.1 penicillin-binding protein PBP1a -
  AMQ28_RS09715 (AMQ28_09720) pilM 2049356..2050417 (+) 1062 WP_053579417.1 pilus assembly protein PilM Machinery gene
  AMQ28_RS09720 (AMQ28_09725) pilN 2050417..2051046 (+) 630 WP_053579418.1 PilN domain-containing protein Machinery gene
  AMQ28_RS09725 (AMQ28_09730) comO 2051043..2051786 (+) 744 WP_053579419.1 type 4a pilus biogenesis protein PilO Machinery gene
  AMQ28_RS09730 (AMQ28_09735) pilP 2051786..2052313 (+) 528 WP_053579420.1 pilus assembly protein PilP Machinery gene
  AMQ28_RS09735 (AMQ28_09740) pilQ 2052375..2054504 (+) 2130 WP_171250371.1 type IV pilus secretin PilQ family protein Machinery gene
  AMQ28_RS09740 (AMQ28_09745) aroK 2054541..2055089 (+) 549 WP_053579422.1 shikimate kinase AroK -
  AMQ28_RS09745 (AMQ28_09750) aroB 2055107..2056192 (+) 1086 WP_053579423.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27911.61 Da        Isoelectric Point: 4.6658

>NTDB_id=155766 AMQ28_RS09725 WP_053579419.1 2051043..2051786(+) (comO) [Acinetobacter sp. TTH0-4]
MSLDEFDELNSQENVSPKKKMTLDKFFQQFNTLDMNNYGSWPLSVKITCWILIILMIALLGYFLAIKSKLENISNAQAQE
QNLLNEFREKDSKLRNLQQLQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGIAALPRIVTLHDFDISATENKEKKTDIPQVTYNVKAKTYRYIGITEAATNNQPSVNTAANPV
AQAGGTQ

Nucleotide


Download         Length: 744 bp        

>NTDB_id=155766 AMQ28_RS09725 WP_053579419.1 2051043..2051786(+) (comO) [Acinetobacter sp. TTH0-4]
ATGAGTCTCGATGAATTTGATGAATTAAATTCCCAAGAAAATGTAAGTCCTAAGAAAAAGATGACACTGGATAAATTTTT
CCAGCAGTTTAATACTTTGGACATGAATAACTATGGCAGTTGGCCGTTATCCGTTAAAATTACCTGTTGGATTTTAATTA
TTTTAATGATCGCTTTGCTGGGTTATTTCTTGGCGATTAAAAGCAAATTAGAAAATATTTCTAATGCACAGGCGCAAGAA
CAAAATTTACTGAATGAATTTCGTGAAAAAGATTCAAAACTGCGTAATTTGCAGCAGTTGCAAGCTCAATTACAAGAAAT
GGAAGCAAATTTTAATCAACAATTAGAGCAGTTGCCTAAAGAAACTGAAATTCCTGGCTTAGTTGAGGACATCAACGTCA
GTGGCGTAAATTCAGGTTTAAAATTTAAGAATATTCGTTTGGAAAATGAAATTAAACAAGAGTTTTTCATTGAACAACCG
ATTTCTATTGAGGCAACAGGCGACTATCATGCTTTTGGTTCATTTGTGAGTGGTATTGCTGCACTTCCGCGTATTGTGAC
TTTGCATGATTTCGATATTTCAGCAACAGAAAATAAAGAGAAAAAAACAGACATTCCTCAAGTGACTTATAACGTTAAAG
CAAAAACATATCGTTATATTGGTATAACAGAGGCTGCAACTAATAATCAACCATCAGTAAATACTGCTGCTAACCCAGTT
GCTCAAGCTGGAGGGACACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HB95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.672

98.785

0.688
  pilO Acinetobacter baumannii D1279779

68.443

98.785

0.676

Multiple sequence alignment