Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AMQ28_RS06620 Genome accession   NZ_CP012608
Coordinates   1403183..1404409 (+) Length   408 a.a.
NCBI ID   WP_053578934.1    Uniprot ID   A0A0M4GJE3
Organism   Acinetobacter sp. TTH0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398183..1409409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS06580 (AMQ28_06585) rimP 1398718..1399242 (-) 525 WP_053578930.1 ribosome maturation factor RimP -
  AMQ28_RS06605 (AMQ28_06610) secG 1400026..1400355 (-) 330 WP_053578931.1 preprotein translocase subunit SecG -
  AMQ28_RS06610 (AMQ28_06615) tpiA 1400369..1401160 (-) 792 WP_053578932.1 triose-phosphate isomerase -
  AMQ28_RS06615 (AMQ28_06620) pilB 1401441..1403153 (+) 1713 WP_053578933.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AMQ28_RS06620 (AMQ28_06625) pilC 1403183..1404409 (+) 1227 WP_053578934.1 type II secretion system F family protein Machinery gene
  AMQ28_RS06625 (AMQ28_06630) pilD 1404409..1405269 (+) 861 WP_053578935.1 prepilin peptidase Machinery gene
  AMQ28_RS06630 (AMQ28_06635) coaE 1405283..1405873 (+) 591 WP_053578936.1 dephospho-CoA kinase -
  AMQ28_RS06635 (AMQ28_06640) - 1405890..1406810 (-) 921 WP_053578937.1 DMT family transporter -
  AMQ28_RS06640 (AMQ28_06645) rlmB 1406848..1407597 (-) 750 WP_053578938.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AMQ28_RS06645 (AMQ28_06650) - 1407729..1408052 (-) 324 WP_053578939.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44887.29 Da        Isoelectric Point: 9.9538

>NTDB_id=155751 AMQ28_RS06620 WP_053578934.1 1403183..1404409(+) (pilC) [Acinetobacter sp. TTH0-4]
MAVKKAQMMPIFSYEGVDRKGAKLKGELPARNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAIIA
GFMEAKKRSKKFRDFLDRAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNRFPSMAVQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=155751 AMQ28_RS06620 WP_053578934.1 1403183..1404409(+) (pilC) [Acinetobacter sp. TTH0-4]
ATGGCTGTTAAAAAAGCGCAGATGATGCCAATCTTCAGTTATGAAGGGGTAGATCGTAAAGGGGCAAAACTAAAAGGGGA
ATTACCCGCGCGTAATATGGCACTGGCCAAAGTAACCTTACGCAAACAAGGTATTACCATTAAAACCATTCGAGAAAAAA
GAAAAAATATTCTCGAAGGATTAATGAAAAAGAAGGTTTCTACACTCGATATCACTATTTTTACACGCCAATTGGCCACT
ATGATGAAAGCAGGCGTTCCTCTGGTTCAAAGTTTTGAAATTGTCGCTGAAGGTCTTGAAAATCCCTCGATGCGTGAAGT
GGTTCTTGGAATTAAAGGTGAGGTTGAAGGCGGCAACACATTTGCAGGGGCTTTACGCAAATATCCTCAACATTTTGACA
ATTTATTTTGTTCTTTGGTGGAATCGGGCGAACAGTCCGGTGCATTGGAAACGATGCTTGATCGTGTAGCCATCTATAAA
GAAAAAAGTGAACTGTTAAAACAAAAAATTAAAAAAGCCATGAAATATCCCGCAGCAGTTGTCGTGGTTGCGGTCATTGT
GACCATTATTTTGATGGTAAAAGTCGTACCTGTATTCCAAGACCTCTTTAGCTCTTTTGGTGCCGATCTACCTGCTTTTA
CCAAAATGGTGGTCAATATGTCGGAATGGATGCAAAAATATTGGTTTCTTCTGATTATTGCGATCGGCGCCATTATTGCT
GGCTTTATGGAAGCTAAAAAACGTAGTAAAAAGTTTCGTGACTTCTTAGATAGGGCTGCTCTTAAAGCACCCATTTTTGG
TGATTTGGTCTATAAAGCCATTATCGCGCGTTATAGCCGTACATTAGCCACTACTTTTGCTGCGGGTGTACCGCTCATTG
ATGCCTTAGAATCTACAGCGGGTGCAACCAATAATGTGGTTTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTGGCA
ACAGGTCAACAATTACAATTTGCTATGCGTGTGACCAATAGATTCCCTTCCATGGCCGTACAAATGGTGGCCATTGGTGA
AGAGTCTGGTGCTCTTGATAGTATGCTGGATAAAGTCGCGACTCATTTTGAAAATGAAGTCGATAATGCTGTAGATGGCC
TGACTTCTATGATGGAACCTTTAATTATGGCTGTCCTAGGTGTCCTAGTCGGCGGCTTGGTCATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4GJE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.951

100

0.9
  pilC Acinetobacter baylyi ADP1

84.314

100

0.843
  pilC Pseudomonas stutzeri DSM 10701

61.728

99.265

0.613
  pilC Legionella pneumophila strain ERS1305867

53.401

97.304

0.52
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.211

97.549

0.412
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment