Detailed information NTG0155752

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AMQ28_RS06625
• Genome accession: NZ_CP012608
• Coordinates: 1404409..1405269 (+)
• Length: 286 a.a.
• NCBI ID: WP_053578935.1
• Uniprot ID: A0A0M4GWE7
• Organism: Acinetobacter sp. TTH0-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1399409..1410269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMQ28_RS06605 (AMQ28_06610)	secG	1400026..1400355 (-)	330	WP_053578931.1	preprotein translocase subunit SecG	-
AMQ28_RS06610 (AMQ28_06615)	tpiA	1400369..1401160 (-)	792	WP_053578932.1	triose-phosphate isomerase	-
AMQ28_RS06615 (AMQ28_06620)	pilB	1401441..1403153 (+)	1713	WP_053578933.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AMQ28_RS06620 (AMQ28_06625)	pilC	1403183..1404409 (+)	1227	WP_053578934.1	type II secretion system F family protein	Machinery gene
AMQ28_RS06625 (AMQ28_06630)	pilD	1404409..1405269 (+)	861	WP_053578935.1	prepilin peptidase	Machinery gene
AMQ28_RS06630 (AMQ28_06635)	coaE	1405283..1405873 (+)	591	WP_053578936.1	dephospho-CoA kinase	-
AMQ28_RS06635 (AMQ28_06640)	-	1405890..1406810 (-)	921	WP_053578937.1	DMT family transporter	-
AMQ28_RS06640 (AMQ28_06645)	rlmB	1406848..1407597 (-)	750	WP_053578938.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AMQ28_RS06645 (AMQ28_06650)	-	1407729..1408052 (-)	324	WP_053578939.1	pyrimidine/purine nucleoside phosphorylase	-
AMQ28_RS06650 (AMQ28_06655)	recN	1408477..1410138 (+)	1662	WP_053578940.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32197.59 Da
• Isoelectric Point: 7.8449

>NTDB_id=155752 AMQ28_RS06625 WP_053578935.1 1404409..1405269(+) (pilD) [Acinetobacter sp. TTH0-4]
MQEFLNYLINTPTALYLIVGLLSLCIGSFLNVVIYRTPKMMEQEWRTDCQFLLHPEQPMIDETKITLSKPNSTCPKCQSP
IRWYQNIPVISWLILRGQCGSCQNPISIRYPFIELLTAVSSLVVVAVFGPTLQMLFGLLLTWILIALTFIDFDTQLLPDR
YTLTLAALGLGINSYAIYTSPTAAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSM
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=155752 AMQ28_RS06625 WP_053578935.1 1404409..1405269(+) (pilD) [Acinetobacter sp. TTH0-4]
ATGCAAGAATTTCTGAATTATCTGATCAATACTCCAACTGCACTTTATTTGATCGTTGGGCTTTTGAGCCTGTGTATTGG
TAGCTTTCTGAATGTCGTGATTTATCGTACCCCGAAAATGATGGAACAAGAATGGCGTACTGACTGCCAATTTTTACTTC
ATCCAGAACAACCCATGATTGATGAGACTAAAATTACTCTCAGCAAACCAAATTCAACTTGCCCAAAGTGTCAAAGTCCC
ATTCGCTGGTATCAAAATATTCCTGTTATTAGCTGGTTAATACTTCGTGGTCAATGTGGTTCATGCCAAAATCCCATCAG
TATTCGTTATCCTTTTATTGAATTATTAACAGCCGTCTCTTCGTTGGTGGTTGTGGCTGTCTTTGGTCCAACCTTACAGA
TGCTTTTTGGTTTGTTGTTGACATGGATTTTAATCGCCCTCACCTTTATTGATTTTGATACTCAACTTTTACCTGATCGT
TATACTTTAACCTTGGCAGCACTGGGCTTAGGAATAAACAGCTATGCGATTTACACTTCTCCAACCGCTGCTATTTGGGG
CTATATCATTGGCTTCTTATGTCTTTGGATTGTGTATTACCTGTTCAAAATCATTACAGGCAAAGAAGGTATGGGTTATG
GAGACTTTAAGTTACTGGCTGCGTTAGGTGCATGGATGGGCCCTTTAATGCTGCCATTAATCGTACTGCTTTCTTCTATG
GTGGGTGCAATTATTGGCATTATTCTGCTTAAAATCCGTAAAGAGAATCAACCTTTTGCTTTCGGCCCTTATATAGCCAT
TGCTGGCTGGATTGCCTTTCTCTGGGGTGAACAGATTATGAAAATTTATTTAGGACAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A0M4GWE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Vibrio cholerae strain A1552	53.933	93.357	0.504
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	46.617	93.007	0.434