Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | AK823_RS01745 | Genome accession | NZ_CP012529 |
| Coordinates | 407207..408328 (-) | Length | 373 a.a. |
| NCBI ID | WP_068034204.1 | Uniprot ID | - |
| Organism | Psychrobacter sp. P2G3 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 402207..413328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AK823_RS01715 (AK823_01715) | - | 402930..403265 (+) | 336 | WP_068034194.1 | c-type cytochrome | - |
| AK823_RS01720 (AK823_01720) | - | 403600..404268 (+) | 669 | WP_068034196.1 | c-type cytochrome | - |
| AK823_RS01725 (AK823_01725) | - | 404418..405560 (+) | 1143 | WP_068034198.1 | hypothetical protein | - |
| AK823_RS01730 (AK823_01730) | - | 405548..405901 (+) | 354 | WP_228138897.1 | RnfH family protein | - |
| AK823_RS01735 (AK823_01735) | bamE | 405912..406346 (-) | 435 | WP_082785598.1 | outer membrane protein assembly factor BamE | - |
| AK823_RS01740 (AK823_01740) | fur | 406670..407104 (+) | 435 | WP_068034202.1 | ferric iron uptake transcriptional regulator | - |
| AK823_RS01745 (AK823_01745) | pilU | 407207..408328 (-) | 1122 | WP_068034204.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AK823_RS01750 (AK823_01750) | pilT | 408414..409469 (-) | 1056 | WP_068325723.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AK823_RS01755 (AK823_01755) | - | 409818..410561 (+) | 744 | WP_068330055.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AK823_RS01760 (AK823_01760) | - | 410639..411913 (-) | 1275 | WP_068325726.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41661.74 Da Isoelectric Point: 6.4321
>NTDB_id=154988 AK823_RS01745 WP_068034204.1 407207..408328(-) (pilU) [Psychrobacter sp. P2G3]
MDFDKLLQLMVKKNGSDLFITAGVAPSMKINGTICPVGQAPLTGEQTLLLVKSLMTYNQQKEFEDTNECQFAISDKSQLA
RFRVSAFMQRDMAGMVLRKIENKIPTVEELRLPPSLKELAMRKRGIILLVGATGTGKSTTLASMIGHRNQNSHGHIITIE
DPIEFVHEHKGCIITQREVGVDTLSFEAGLKNTLRQAPDVILIGEIRNREVMDYAIQYAETGHLVFATLHANNANQAIDR
IIHFFEADRHNQLFMDLSLNLQAIVAQQLIPTPDGKGYRAAIEVLLNSQLISDYIRKGELHEIKEVMTRSRDSGMQTFDQ
ALFDLYENGDITYQDAIKHADSPNDLRLKIKLNSKNGSKDIDENASGLSLNIG
MDFDKLLQLMVKKNGSDLFITAGVAPSMKINGTICPVGQAPLTGEQTLLLVKSLMTYNQQKEFEDTNECQFAISDKSQLA
RFRVSAFMQRDMAGMVLRKIENKIPTVEELRLPPSLKELAMRKRGIILLVGATGTGKSTTLASMIGHRNQNSHGHIITIE
DPIEFVHEHKGCIITQREVGVDTLSFEAGLKNTLRQAPDVILIGEIRNREVMDYAIQYAETGHLVFATLHANNANQAIDR
IIHFFEADRHNQLFMDLSLNLQAIVAQQLIPTPDGKGYRAAIEVLLNSQLISDYIRKGELHEIKEVMTRSRDSGMQTFDQ
ALFDLYENGDITYQDAIKHADSPNDLRLKIKLNSKNGSKDIDENASGLSLNIG
Nucleotide
Download Length: 1122 bp
>NTDB_id=154988 AK823_RS01745 WP_068034204.1 407207..408328(-) (pilU) [Psychrobacter sp. P2G3]
ATGGACTTCGACAAACTACTACAACTCATGGTTAAAAAGAACGGCTCTGATCTATTTATCACAGCTGGCGTAGCCCCTTC
TATGAAAATAAATGGCACTATCTGCCCTGTGGGACAGGCGCCATTGACTGGTGAGCAAACGCTACTTTTGGTCAAAAGCC
TTATGACCTACAATCAGCAAAAAGAGTTTGAAGACACTAATGAATGTCAATTTGCCATCTCAGATAAATCGCAGCTAGCA
CGCTTTCGGGTTAGTGCTTTTATGCAGCGTGATATGGCAGGGATGGTTCTAAGAAAGATTGAAAATAAAATACCAACGGT
TGAAGAGCTGCGCTTGCCGCCCTCTCTAAAAGAGTTGGCAATGAGAAAGCGTGGTATTATTTTATTGGTAGGTGCAACGG
GTACCGGCAAATCAACAACGCTTGCTTCGATGATAGGTCATCGTAATCAAAACTCCCATGGTCATATTATTACCATCGAA
GATCCGATAGAGTTCGTACATGAGCATAAAGGCTGTATTATTACGCAACGCGAAGTTGGTGTCGATACTTTATCGTTTGA
AGCAGGTCTAAAAAACACTTTGCGCCAAGCCCCTGACGTTATTCTAATTGGCGAGATTCGTAATCGTGAAGTTATGGATT
ATGCCATTCAATATGCTGAAACAGGGCATTTAGTTTTTGCAACGTTACATGCAAATAATGCCAACCAAGCTATTGATCGC
ATCATTCATTTCTTTGAGGCTGATCGTCATAATCAGTTATTTATGGATTTATCACTTAACTTACAGGCCATTGTTGCTCA
ACAGCTTATTCCAACCCCAGACGGTAAAGGCTACCGTGCCGCTATTGAAGTTCTACTGAACTCGCAGCTAATTAGTGACT
ATATCCGTAAGGGTGAGCTACATGAAATTAAAGAGGTCATGACGCGCTCACGTGATAGTGGTATGCAAACATTTGATCAA
GCGCTGTTTGATCTTTACGAAAATGGTGATATTACCTACCAAGATGCGATTAAACACGCTGACTCACCAAACGACTTACG
CCTAAAAATCAAACTGAATAGTAAAAACGGTAGTAAAGATATTGATGAAAATGCTAGTGGTTTGTCTTTAAATATTGGCT
AG
ATGGACTTCGACAAACTACTACAACTCATGGTTAAAAAGAACGGCTCTGATCTATTTATCACAGCTGGCGTAGCCCCTTC
TATGAAAATAAATGGCACTATCTGCCCTGTGGGACAGGCGCCATTGACTGGTGAGCAAACGCTACTTTTGGTCAAAAGCC
TTATGACCTACAATCAGCAAAAAGAGTTTGAAGACACTAATGAATGTCAATTTGCCATCTCAGATAAATCGCAGCTAGCA
CGCTTTCGGGTTAGTGCTTTTATGCAGCGTGATATGGCAGGGATGGTTCTAAGAAAGATTGAAAATAAAATACCAACGGT
TGAAGAGCTGCGCTTGCCGCCCTCTCTAAAAGAGTTGGCAATGAGAAAGCGTGGTATTATTTTATTGGTAGGTGCAACGG
GTACCGGCAAATCAACAACGCTTGCTTCGATGATAGGTCATCGTAATCAAAACTCCCATGGTCATATTATTACCATCGAA
GATCCGATAGAGTTCGTACATGAGCATAAAGGCTGTATTATTACGCAACGCGAAGTTGGTGTCGATACTTTATCGTTTGA
AGCAGGTCTAAAAAACACTTTGCGCCAAGCCCCTGACGTTATTCTAATTGGCGAGATTCGTAATCGTGAAGTTATGGATT
ATGCCATTCAATATGCTGAAACAGGGCATTTAGTTTTTGCAACGTTACATGCAAATAATGCCAACCAAGCTATTGATCGC
ATCATTCATTTCTTTGAGGCTGATCGTCATAATCAGTTATTTATGGATTTATCACTTAACTTACAGGCCATTGTTGCTCA
ACAGCTTATTCCAACCCCAGACGGTAAAGGCTACCGTGCCGCTATTGAAGTTCTACTGAACTCGCAGCTAATTAGTGACT
ATATCCGTAAGGGTGAGCTACATGAAATTAAAGAGGTCATGACGCGCTCACGTGATAGTGGTATGCAAACATTTGATCAA
GCGCTGTTTGATCTTTACGAAAATGGTGATATTACCTACCAAGATGCGATTAAACACGCTGACTCACCAAACGACTTACG
CCTAAAAATCAAACTGAATAGTAAAAACGGTAGTAAAGATATTGATGAAAATGCTAGTGGTTTGTCTTTAAATATTGGCT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
68.785 |
97.051 |
0.668 |
| pilU | Pseudomonas stutzeri DSM 10701 |
65.591 |
99.732 |
0.654 |
| pilU | Vibrio cholerae strain A1552 |
53.495 |
99.732 |
0.534 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.966 |
93.298 |
0.41 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.964 |
90.08 |
0.378 |
| pilT | Legionella pneumophila strain Lp02 |
41.964 |
90.08 |
0.378 |
| pilT | Acinetobacter nosocomialis M2 |
39.65 |
91.957 |
0.365 |
| pilT | Acinetobacter baumannii D1279779 |
39.65 |
91.957 |
0.365 |
| pilT | Acinetobacter baumannii strain A118 |
39.65 |
91.957 |
0.365 |
| pilT | Pseudomonas aeruginosa PAK |
39.306 |
92.761 |
0.365 |