Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AMS64_RS03335 Genome accession   NZ_CP012504
Coordinates   691204..692445 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain TH0426     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 686204..697445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMS64_RS03310 (AMS64_03290) mutT 688197..688601 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  AMS64_RS03315 (AMS64_03295) yacG 688678..688872 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  AMS64_RS03320 (AMS64_03300) zapD 688882..689604 (-) 723 WP_005336141.1 cell division protein ZapD -
  AMS64_RS03325 (AMS64_03305) coaE 689642..690256 (-) 615 WP_064335312.1 dephospho-CoA kinase -
  AMS64_RS03330 (AMS64_03310) pilD 690270..691142 (-) 873 WP_064335313.1 A24 family peptidase Machinery gene
  AMS64_RS03335 (AMS64_03315) pilC 691204..692445 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  AMS64_RS03340 (AMS64_03320) pilB 692685..694391 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AMS64_RS03345 (AMS64_03325) tapA 694401..694826 (-) 426 WP_082182205.1 type IVa pilus major pilin TapA -
  AMS64_RS03350 (AMS64_03330) nadC 695154..696029 (-) 876 WP_064335315.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AMS64_RS03355 (AMS64_03335) - 696033..696503 (-) 471 WP_005336129.1 TIGR02281 family clan AA aspartic protease -
  AMS64_RS03360 (AMS64_03340) ampD 696634..697209 (+) 576 WP_064335316.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=154824 AMS64_RS03335 WP_005336136.1 691204..692445(-) (pilC) [Aeromonas veronii strain TH0426]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=154824 AMS64_RS03335 WP_005336136.1 691204..692445(-) (pilC) [Aeromonas veronii strain TH0426]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGAGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCACGC
CAAATAACTACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCATGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCACTGCGCCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTACGACCGTATC
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCTATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGTACTTTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTGATTTCGGCAGCAGGGGCCTCGGGCAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment