Detailed information NTG0154823

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AMS64_RS03330
• Genome accession: NZ_CP012504
• Coordinates: 690270..691142 (-)
• Length: 290 a.a.
• NCBI ID: WP_064335313.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain TH0426
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 685270..696142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMS64_RS03305 (AMS64_03285)	secA	685402..688122 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
AMS64_RS03310 (AMS64_03290)	mutT	688197..688601 (+)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
AMS64_RS03315 (AMS64_03295)	yacG	688678..688872 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
AMS64_RS03320 (AMS64_03300)	zapD	688882..689604 (-)	723	WP_005336141.1	cell division protein ZapD	-
AMS64_RS03325 (AMS64_03305)	coaE	689642..690256 (-)	615	WP_064335312.1	dephospho-CoA kinase	-
AMS64_RS03330 (AMS64_03310)	pilD	690270..691142 (-)	873	WP_064335313.1	A24 family peptidase	Machinery gene
AMS64_RS03335 (AMS64_03315)	pilC	691204..692445 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
AMS64_RS03340 (AMS64_03320)	pilB	692685..694391 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AMS64_RS03345 (AMS64_03325)	tapA	694401..694826 (-)	426	WP_082182205.1	type IVa pilus major pilin TapA	-
AMS64_RS03350 (AMS64_03330)	nadC	695154..696029 (-)	876	WP_064335315.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32031.32 Da
• Isoelectric Point: 6.7366

>NTDB_id=154823 AMS64_RS03330 WP_064335313.1 690270..691142(-) (pilD) [Aeromonas veronii strain TH0426]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQTEYRGYFSPDEEATVADRYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRCYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=154823 AMS64_RS03330 WP_064335313.1 690270..691142(-) (pilD) [Aeromonas veronii strain TH0426]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTGGTCATCCACCGTTTGCCCATCATGCTGGAGCGGGAGTGGCAGACCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGTTGCAGATCGCTACAACCTGATGGTGCCACGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTGGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGCA
CGCTGGCTGCTCTGCTGCTCACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGACTGCTGTTCAACCTGGCAGGTGGCTTCGTGCCGCTGGCTGATGCCGTAATTGG
CGCAATGGCGGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTGACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCAGCCCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATTATTCTGCTGCTCTCATCCCTG
GTCGGCGCAGTGATCGGTATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGTTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.947	98.276	0.579
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	54.104	92.414	0.5
pilD	Acinetobacter nosocomialis M2	54.104	92.414	0.5
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455