Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AMM49_RS01245 | Genome accession | NZ_CP012480 |
| Coordinates | 206993..207388 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain NGBS128 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 201993..212388
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMM49_RS01210 (AMM49_01205) | proC | 202387..203157 (-) | 771 | WP_001869147.1 | pyrroline-5-carboxylate reductase | - |
| AMM49_RS01215 (AMM49_01210) | pepA | 203227..204294 (-) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
| AMM49_RS01220 (AMM49_01215) | - | 204479..204718 (-) | 240 | WP_000660177.1 | hypothetical protein | - |
| AMM49_RS01225 (AMM49_01220) | - | 204879..205163 (+) | 285 | WP_000791273.1 | DUF4651 domain-containing protein | - |
| AMM49_RS01230 (AMM49_01225) | - | 205160..205483 (+) | 324 | WP_000602780.1 | thioredoxin family protein | - |
| AMM49_RS01235 (AMM49_01230) | ytpR | 205516..206142 (+) | 627 | WP_000578325.1 | YtpR family tRNA-binding protein | - |
| AMM49_RS01240 (AMM49_01235) | - | 206196..206912 (-) | 717 | WP_000186176.1 | class I SAM-dependent methyltransferase | - |
| AMM49_RS01245 (AMM49_01240) | ssbA | 206993..207388 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| AMM49_RS01250 (AMM49_01245) | - | 207512..208156 (+) | 645 | WP_000416617.1 | HAD family hydrolase | - |
| AMM49_RS01255 (AMM49_01250) | - | 208183..209928 (+) | 1746 | WP_000930332.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| AMM49_RS01260 (AMM49_01255) | - | 209909..210649 (+) | 741 | WP_000697627.1 | LytR/AlgR family response regulator transcription factor | - |
| AMM49_RS01265 (AMM49_01260) | - | 210819..211274 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| AMM49_RS01270 (AMM49_01265) | lrgB | 211276..212004 (+) | 729 | WP_000421727.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=154583 AMM49_RS01245 WP_000282447.1 206993..207388(+) (ssbA) [Streptococcus agalactiae strain NGBS128]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=154583 AMM49_RS01245 WP_000282447.1 206993..207388(+) (ssbA) [Streptococcus agalactiae strain NGBS128]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |