Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AMD29_RS01385 Genome accession   NZ_CP012419
Coordinates   226236..226631 (+) Length   131 a.a.
NCBI ID   WP_000282447.1    Uniprot ID   A0AAV3JLT6
Organism   Streptococcus agalactiae strain SG-M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 221236..231631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS01350 (AMD29_01350) proC 221630..222400 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  AMD29_RS01355 (AMD29_01355) pepA 222470..223537 (-) 1068 WP_001281323.1 glutamyl aminopeptidase -
  AMD29_RS01360 (AMD29_01360) - 223722..223961 (-) 240 WP_000660180.1 hypothetical protein -
  AMD29_RS01365 (AMD29_01365) - 224122..224406 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  AMD29_RS01370 (AMD29_01370) - 224403..224726 (+) 324 WP_000602781.1 thioredoxin family protein -
  AMD29_RS01375 (AMD29_01375) ytpR 224759..225385 (+) 627 WP_000578328.1 YtpR family tRNA-binding protein -
  AMD29_RS01380 (AMD29_01380) - 225439..226155 (-) 717 WP_000186185.1 class I SAM-dependent methyltransferase -
  AMD29_RS01385 (AMD29_01385) ssbA 226236..226631 (+) 396 WP_000282447.1 single-stranded DNA-binding protein Machinery gene
  AMD29_RS01390 (AMD29_01390) - 226755..227399 (+) 645 WP_000416612.1 HAD family hydrolase -
  AMD29_RS01395 (AMD29_01395) - 227426..229171 (+) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  AMD29_RS01400 (AMD29_01400) - 229152..229892 (+) 741 WP_000697630.1 LytR/AlgR family response regulator transcription factor -
  AMD29_RS01405 (AMD29_01405) - 230062..230517 (+) 456 WP_000683316.1 CidA/LrgA family protein -
  AMD29_RS01410 (AMD29_01410) lrgB 230519..231247 (+) 729 WP_000421726.1 antiholin-like protein LrgB -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14774.80 Da        Isoelectric Point: 7.0189

>NTDB_id=154381 AMD29_RS01385 WP_000282447.1 226236..226631(+) (ssbA) [Streptococcus agalactiae strain SG-M1]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=154381 AMD29_RS01385 WP_000282447.1 226236..226631(+) (ssbA) [Streptococcus agalactiae strain SG-M1]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397

Multiple sequence alignment