Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | WM2015_RS16360 | Genome accession | NZ_CP012154 |
| Coordinates | 2251955..2252404 (+) | Length | 149 a.a. |
| NCBI ID | WP_281173112.1 | Uniprot ID | A0A0K0XX46 |
| Organism | Wenzhouxiangella marina strain KCTC 42284 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2244465..2269677 | 2251955..2252404 | within | 0 |
Gene organization within MGE regions
Location: 2244465..2269677
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM2015_RS09530 (WM2015_1879) | - | 2244465..2246438 (-) | 1974 | WP_156201043.1 | hypothetical protein | - |
| WM2015_RS09535 (WM2015_1880) | - | 2246707..2247600 (+) | 894 | WP_082169626.1 | glycosyltransferase family 2 protein | - |
| WM2015_RS09540 | - | 2247659..2248663 (-) | 1005 | WP_156201046.1 | hypothetical protein | - |
| WM2015_RS09545 (WM2015_1882) | - | 2248615..2249241 (-) | 627 | WP_049725826.1 | class I SAM-dependent methyltransferase | - |
| WM2015_RS09550 (WM2015_1883) | - | 2249771..2251681 (+) | 1911 | WP_049725827.1 | hypothetical protein | - |
| WM2015_RS16360 (WM2015_1884) | pilA2 | 2251955..2252404 (+) | 450 | WP_281173112.1 | pilin | Machinery gene |
| WM2015_RS16365 (WM2015_1885) | - | 2252660..2253097 (+) | 438 | WP_049725829.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| WM2015_RS09565 (WM2015_1886) | pilB | 2253206..2254930 (+) | 1725 | WP_049725830.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| WM2015_RS09570 (WM2015_1887) | pilC | 2255170..2256390 (+) | 1221 | WP_049725831.1 | type II secretion system F family protein | Machinery gene |
| WM2015_RS09575 (WM2015_1888) | pilD | 2256521..2257342 (+) | 822 | WP_049727044.1 | A24 family peptidase | Machinery gene |
| WM2015_RS09580 (WM2015_1889) | - | 2257610..2258311 (-) | 702 | WP_049725832.1 | response regulator transcription factor | - |
| WM2015_RS09585 (WM2015_1890) | - | 2258494..2260386 (-) | 1893 | WP_169751138.1 | sulfatase-like hydrolase/transferase | - |
| WM2015_RS09590 (WM2015_1891) | rho | 2260519..2261775 (-) | 1257 | WP_049725834.1 | transcription termination factor Rho | - |
| WM2015_RS09595 (WM2015_1892) | trxA | 2262042..2262368 (-) | 327 | WP_049725835.1 | thioredoxin TrxA | - |
| WM2015_RS09600 (WM2015_1893) | - | 2262584..2263879 (+) | 1296 | WP_049725836.1 | DEAD/DEAH box helicase | - |
| WM2015_RS09605 (WM2015_1894) | - | 2263948..2264844 (+) | 897 | WP_049725837.1 | type II secretion system protein N | - |
| WM2015_RS09610 (WM2015_1895) | - | 2264841..2266757 (+) | 1917 | WP_049725838.1 | secretin N-terminal domain-containing protein | - |
| WM2015_RS09615 (WM2015_1896) | gspE | 2266747..2268225 (+) | 1479 | WP_049725839.1 | type II secretion system ATPase GspE | - |
| WM2015_RS09620 (WM2015_1897) | - | 2268230..2269426 (+) | 1197 | WP_049725840.1 | type II secretion system F family protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15258.40 Da Isoelectric Point: 7.0787
>NTDB_id=151966 WM2015_RS16360 WP_281173112.1 2251955..2252404(+) (pilA2) [Wenzhouxiangella marina strain KCTC 42284]
MNLPRNMQKQQGFTLIELMIVIAILAILLAIAIPAYQNYSIRAANSECVNLAASIKLAVSETAQSNGVLATGVATATAAG
VVPANVATPRCGSVTVAAGVITIASTGSDGTSAGTFTFTPTQSTINDSIQWNCTANHGNPQHVPAECRS
MNLPRNMQKQQGFTLIELMIVIAILAILLAIAIPAYQNYSIRAANSECVNLAASIKLAVSETAQSNGVLATGVATATAAG
VVPANVATPRCGSVTVAAGVITIASTGSDGTSAGTFTFTPTQSTINDSIQWNCTANHGNPQHVPAECRS
Nucleotide
Download Length: 450 bp
>NTDB_id=151966 WM2015_RS16360 WP_281173112.1 2251955..2252404(+) (pilA2) [Wenzhouxiangella marina strain KCTC 42284]
ATGAACCTTCCCCGCAATATGCAGAAGCAGCAGGGCTTCACCCTGATCGAACTCATGATCGTGATTGCCATTCTGGCCAT
CCTGCTGGCCATCGCAATCCCGGCTTACCAGAACTATTCGATCCGCGCCGCCAATAGTGAGTGCGTCAATCTGGCCGCCT
CCATCAAGCTGGCCGTATCCGAAACCGCCCAGTCGAACGGCGTACTGGCGACCGGTGTCGCGACTGCGACGGCTGCAGGC
GTTGTCCCGGCCAACGTTGCAACTCCCCGCTGCGGCAGTGTGACCGTCGCCGCAGGCGTGATCACGATCGCCAGCACGGG
CAGCGACGGCACGTCGGCAGGCACCTTCACCTTCACCCCGACGCAGTCCACCATCAACGACTCCATCCAGTGGAACTGCA
CGGCGAACCACGGGAACCCGCAGCACGTCCCGGCTGAGTGTCGTTCATAA
ATGAACCTTCCCCGCAATATGCAGAAGCAGCAGGGCTTCACCCTGATCGAACTCATGATCGTGATTGCCATTCTGGCCAT
CCTGCTGGCCATCGCAATCCCGGCTTACCAGAACTATTCGATCCGCGCCGCCAATAGTGAGTGCGTCAATCTGGCCGCCT
CCATCAAGCTGGCCGTATCCGAAACCGCCCAGTCGAACGGCGTACTGGCGACCGGTGTCGCGACTGCGACGGCTGCAGGC
GTTGTCCCGGCCAACGTTGCAACTCCCCGCTGCGGCAGTGTGACCGTCGCCGCAGGCGTGATCACGATCGCCAGCACGGG
CAGCGACGGCACGTCGGCAGGCACCTTCACCTTCACCCCGACGCAGTCCACCATCAACGACTCCATCCAGTGGAACTGCA
CGGCGAACCACGGGAACCCGCAGCACGTCCCGGCTGAGTGTCGTTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.408 |
95.302 |
0.49 |
| pilA2 | Legionella pneumophila str. Paris |
51.408 |
95.302 |
0.49 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.278 |
100 |
0.423 |
| comP | Acinetobacter baylyi ADP1 |
40.789 |
100 |
0.416 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.478 |
100 |
0.389 |
| pilE | Neisseria gonorrhoeae MS11 |
35.625 |
100 |
0.383 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.667 |
100 |
0.369 |
| pilA | Pseudomonas aeruginosa PAK |
34.839 |
100 |
0.362 |