Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ADJ79_RS09920 Genome accession   NZ_CP012073
Coordinates   2263075..2264304 (-) Length   409 a.a.
NCBI ID   WP_050715821.1    Uniprot ID   A0AAW6RMN2
Organism   Ottowia sp. oral taxon 894 strain W10237     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258075..2269304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ79_RS09895 (ADJ79_09960) clpP 2258382..2258993 (-) 612 WP_050715816.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ADJ79_RS09900 (ADJ79_09965) tig 2259092..2260408 (-) 1317 WP_050715817.1 trigger factor -
  ADJ79_RS13305 - 2260517..2260717 (-) 201 WP_082203248.1 DNA gyrase inhibitor YacG -
  ADJ79_RS09905 (ADJ79_09970) zapD 2260714..2261469 (-) 756 WP_050715818.1 cell division protein ZapD -
  ADJ79_RS09910 (ADJ79_09975) coaE 2261503..2262108 (-) 606 WP_050715819.1 dephospho-CoA kinase -
  ADJ79_RS09915 (ADJ79_09980) - 2262130..2263071 (-) 942 WP_050715820.1 A24 family peptidase -
  ADJ79_RS09920 (ADJ79_09985) pilC 2263075..2264304 (-) 1230 WP_050715821.1 type II secretion system F family protein Machinery gene
  ADJ79_RS09925 (ADJ79_09990) pilB 2264339..2266063 (-) 1725 WP_050715822.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ADJ79_RS09935 (ADJ79_10000) - 2266329..2267309 (-) 981 WP_050715823.1 polyprenyl synthetase family protein -
  ADJ79_RS09940 (ADJ79_10005) - 2267363..2268493 (-) 1131 WP_050715824.1 WG repeat-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45095.09 Da        Isoelectric Point: 9.8067

>NTDB_id=151081 ADJ79_RS09920 WP_050715821.1 2263075..2264304(-) (pilC) [Ottowia sp. oral taxon 894 strain W10237]
MATAASRPNMKSVKEVIFEWEGKDRNGKIVRGELRAAGEHQVQATLRRQGILVTKVRKRRMRSGKKIAPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGSTNPSVAKLLNDIRTDVESGSSLSSAFRKHPLYFNTLYCNLVEAGEAAGILEDLLDRLAIY
MEKTEAIKSKIKSALMYPVAVIVVAFVVVALIMIFVIPAFKSVFENFGADLPAPTLFVIAMSEFFVKYWYIIFIGIFGGV
YFFLQSWKRNEKMQMFMDRLLLQIPIFGNLIEKSVIARWTRTLSTMFAAGVPLVESLDSVGGAAGNYIYKSATQKIQQEV
STGTSLTNAMSNANVFPSMVIQMTAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=151081 ADJ79_RS09920 WP_050715821.1 2263075..2264304(-) (pilC) [Ottowia sp. oral taxon 894 strain W10237]
ATGGCAACAGCAGCCTCACGCCCAAACATGAAATCCGTCAAAGAAGTTATCTTTGAATGGGAAGGTAAAGATCGCAACGG
CAAAATTGTTCGGGGCGAGTTGCGAGCCGCCGGCGAGCATCAGGTCCAAGCTACCTTGCGCAGGCAAGGCATTTTAGTAA
CAAAAGTGCGCAAGCGCCGGATGCGGTCTGGCAAAAAAATCGCGCCCAAAGACATAGCCATATTCACCCGACAGCTCGCC
ACCATGATGAAGGCGGGCGTGCCGTTGCTGCAATCCTTTGACATTGTTGGTCGGGGCAGTACCAACCCCAGCGTTGCCAA
GCTGCTCAATGACATTCGCACCGATGTGGAATCAGGCTCTTCTTTGTCATCGGCCTTTCGGAAACATCCACTCTATTTCA
ATACCCTCTACTGCAATTTGGTAGAGGCCGGGGAAGCGGCGGGTATTTTGGAAGATCTTCTGGATCGTCTTGCCATTTAC
ATGGAAAAGACGGAAGCCATTAAATCAAAAATCAAATCAGCATTGATGTATCCGGTTGCCGTTATTGTCGTGGCATTCGT
GGTCGTTGCCTTGATCATGATCTTTGTCATCCCGGCATTCAAGAGCGTCTTCGAAAATTTTGGCGCAGATTTGCCAGCGC
CAACGCTTTTTGTGATCGCCATGAGCGAATTTTTCGTAAAATACTGGTATATCATATTTATCGGAATATTTGGTGGGGTG
TATTTTTTCCTGCAGTCATGGAAGAGAAATGAGAAAATGCAGATGTTCATGGATCGGCTGCTTTTACAAATACCAATTTT
TGGCAATCTGATTGAAAAGTCAGTGATTGCGCGCTGGACGCGGACCCTCTCGACCATGTTTGCTGCTGGCGTTCCTCTTG
TTGAATCCTTGGATTCAGTTGGCGGCGCGGCAGGTAACTATATTTATAAGTCGGCAACTCAAAAAATCCAACAGGAAGTT
TCGACTGGCACCAGCCTGACAAATGCCATGTCCAATGCAAATGTATTCCCGAGCATGGTTATACAAATGACTGCCATTGG
CGAAGAATCGGGCTCCATTGACCATATGCTTGGCAAAGCGGCCGACTTCTACGAAGCCGAAGTTGATGAGATGGTTGCCG
GACTGTCAAGCCTGATGGAGCCTATCATTATTGTTTTCCTTGGAACCATTATTGGCGGCATTGTTGTCTCAATGTATTTG
CCGATCTTCAAGCTGGGTTCTGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.726

98.289

0.538
  pilG Neisseria gonorrhoeae MS11

52.897

97.066

0.513
  pilG Neisseria meningitidis 44/76-A

52.645

97.066

0.511
  pilC Legionella pneumophila strain ERS1305867

52.02

96.822

0.504
  pilC Acinetobacter baumannii D1279779

50.882

97.066

0.494
  pilC Acinetobacter baylyi ADP1

49.749

97.311

0.484
  pilC Vibrio cholerae strain A1552

40.806

97.066

0.396
  pilC Vibrio campbellii strain DS40M4

37.864

100

0.381
  pilC Thermus thermophilus HB27

38

97.8

0.372

Multiple sequence alignment