Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | AB434_RS04055 | Genome accession | NZ_CP011939 |
| Coordinates | 870092..870451 (+) | Length | 119 a.a. |
| NCBI ID | WP_014096779.1 | Uniprot ID | - |
| Organism | Heyndrickxia coagulans strain S-lac | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 865092..875451
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB434_RS04040 (AB434_0909) | - | 866008..868809 (+) | 2802 | WP_017550307.1 | DEAD/DEAH box helicase | - |
| AB434_RS04045 (AB434_0910) | - | 868897..869331 (+) | 435 | WP_014096781.1 | DUF4944 domain-containing protein | - |
| AB434_RS04050 (AB434_0911) | - | 869363..869785 (-) | 423 | WP_014096780.1 | YwpF-like family protein | - |
| AB434_RS04055 (AB434_0913) | ssbB | 870092..870451 (+) | 360 | WP_014096779.1 | single-stranded DNA-binding protein | Machinery gene |
| AB434_RS19025 (AB434_0914) | - | 870458..870622 (+) | 165 | WP_013860712.1 | hypothetical protein | - |
| AB434_RS04060 (AB434_0916) | fabZ | 870807..871232 (-) | 426 | WP_014096778.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| AB434_RS04065 (AB434_0918) | - | 871360..872190 (-) | 831 | WP_014096777.1 | flagellar hook-basal body protein | - |
| AB434_RS04070 (AB434_0919) | - | 872218..873006 (-) | 789 | WP_035183247.1 | flagellar hook-basal body protein | - |
| AB434_RS04075 (AB434_0920) | - | 873045..874046 (-) | 1002 | WP_014096775.1 | rod shape-determining protein | - |
| AB434_RS04080 (AB434_0921) | spoIIID | 874436..874702 (-) | 267 | WP_014096774.1 | sporulation transcriptional regulator SpoIIID | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13455.36 Da Isoelectric Point: 9.9022
>NTDB_id=149496 AB434_RS04055 WP_014096779.1 870092..870451(+) (ssbB) [Heyndrickxia coagulans strain S-lac]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
Nucleotide
Download Length: 360 bp
>NTDB_id=149496 AB434_RS04055 WP_014096779.1 870092..870451(+) (ssbB) [Heyndrickxia coagulans strain S-lac]
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACAGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACAGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.818 |
92.437 |
0.571 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
89.076 |
0.471 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.552 |
97.479 |
0.454 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.379 |
97.479 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.667 |
90.756 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
40.741 |
90.756 |
0.37 |