Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB691_RS05110 Genome accession   NZ_CP011854
Coordinates   1091143..1092360 (+) Length   405 a.a.
NCBI ID   WP_048328643.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SLG510A3-8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086143..1097360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB691_RS21540 - 1087388..1088326 (-) 939 WP_230678778.1 O-antigen ligase family protein -
  AB691_RS22220 - 1088326..1088688 (+) 363 WP_230678780.1 hypothetical protein -
  AB691_RS05100 pilA2 1088690..1089115 (-) 426 WP_048328641.1 pilin Machinery gene
  AB691_RS05105 (AB691_1056) pilB 1089437..1091140 (+) 1704 WP_048328642.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB691_RS05110 (AB691_1057) pilC 1091143..1092360 (+) 1218 WP_048328643.1 type II secretion system F family protein Machinery gene
  AB691_RS05115 (AB691_1058) pilD 1092365..1093231 (+) 867 WP_048328644.1 prepilin peptidase Machinery gene
  AB691_RS05120 (AB691_1059) coaE 1093363..1093971 (+) 609 WP_014595960.1 dephospho-CoA kinase -
  AB691_RS05125 yacG 1093968..1094165 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  AB691_RS05130 (AB691_1060) - 1094178..1094858 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  AB691_RS05135 (AB691_1061) - 1094915..1095955 (-) 1041 WP_048328645.1 NADP(H)-dependent aldo-keto reductase -
  AB691_RS05140 (AB691_1062) rplM 1096370..1096798 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  AB691_RS05145 (AB691_1063) rpsI 1096814..1097206 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44094.77 Da        Isoelectric Point: 9.8747

>NTDB_id=149014 AB691_RS05110 WP_048328643.1 1091143..1092360(+) (pilC) [Stutzerimonas stutzeri strain SLG510A3-8]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIILAGLIAGAFAFK
EGHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKNDVSSGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=149014 AB691_RS05110 WP_048328643.1 1091143..1092360(+) (pilC) [Stutzerimonas stutzeri strain SLG510A3-8]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
CAGTGGTGCGAGCCCGGCGCTGGTGAAGGCGCAATTGCGCAAGCAAGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TGTCTCTGTTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGCGTACCACTGCTGCAGTCCTTCGATATCATCGGTGAAGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAAGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAGAAGCCACAATACTTCGATGACCTGTATT
GCAACTTGGTCGATTCCGGTGAGCAATCCGGTGCCTTGGAAACCTTGCTCGATCGCGTGGCGACCTACAAGGAAAAGACC
GAGGCATTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATTGCGGTAGTGTTGGTGGCGGTCATTGTGTCGGCCAT
TCTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTTGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TCATTGGGTTGTCGGAGGCTCTGCAGGAGTGGTGGTTCATTATTCTGGCAGGTTTGATCGCTGGGGCTTTTGCTTTCAAG
GAGGGGCACAAGCGCTCCGAGAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTGCCAGTTGTTGGTGACATTCT
TTACAAGTCATCCGTAGCCCGCTTTGCCCGAACTCTGTCAACGACTTTTGCTGCTGGTGTGCCGCTGGTGGATGCGTTGG
ACTCGGTGGCTGGAGCTACGGGCAATGTGGTCTTTCGAAGCGCTACGATGAAGGTCAAGAATGATGTATCCAGTGGAATG
CAGCTTAACTTCTCCATGCGCACTACGGGGACGTTCCCTACGATGGCGGTGCAGATGACAGCAATCGGTGAAGAGTCTGG
TTCGCTTGATGAGATGCTGGCTAAGGTTGCGACTTTCTACGAGGACGAAGTCGATAACATGGTAGATGGCCTGACTAGCC
TGATGGAGCCGATGATCATGGCTGTACTCGGGGTTCTGGTGGGCGGCTTGATCATTGCCATGTACCTTCCGATATTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baylyi ADP1

60.345

100

0.605
  pilC Acinetobacter baumannii D1279779

60.247

100

0.602
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

44.697

97.778

0.437
  pilG Neisseria meningitidis 44/76-A

44.697

97.778

0.437
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405
  pilC Thermus thermophilus HB27

36.591

98.519

0.36

Multiple sequence alignment