Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM48_RS10800 Genome accession   NZ_CP014667
Coordinates   2183167..2183643 (+) Length   158 a.a.
NCBI ID   WP_001541535.1    Uniprot ID   -
Organism   Escherichia coli strain ECONIH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178167..2188643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM48_RS10770 (WM48_10755) - 2179064..2180134 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  WM48_RS10775 (WM48_10760) - 2180270..2180947 (+) 678 WP_001362823.1 hypothetical protein -
  WM48_RS10780 (WM48_10765) - 2180963..2181373 (+) 411 WP_000846704.1 hypothetical protein -
  WM48_RS10785 (WM48_10770) - 2181594..2182415 (+) 822 WP_001234571.1 DUF932 domain-containing protein -
  WM48_RS10795 (WM48_10780) - 2182678..2183151 (+) 474 WP_000855074.1 antirestriction protein -
  WM48_RS10800 (WM48_10785) radC 2183167..2183643 (+) 477 WP_001541535.1 RadC family protein Machinery gene
  WM48_RS10805 (WM48_10790) yeeT 2183712..2183933 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  WM48_RS10810 (WM48_10795) cbeA 2184007..2184375 (+) 369 WP_024174331.1 type IV toxin-antitoxin system YeeU family antitoxin -
  WM48_RS10815 (WM48_10800) cbtA 2184464..2184838 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  WM48_RS10820 (WM48_10805) yeeW 2184835..2185029 (+) 195 WP_000988601.1 DUF5983 family protein -
  WM48_RS29230 (WM48_10810) - 2185075..2185155 (+) 81 Protein_2092 hypothetical protein -
  WM48_RS30355 (WM48_10815) - 2185644..2185826 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  WM48_RS10835 (WM48_10820) tmaR 2185927..2186256 (-) 330 WP_000450409.1 DUF496 family protein -
  WM48_RS10840 (WM48_10825) yeeA 2186428..2187486 (-) 1059 WP_001200890.1 FUSC family protein -
  WM48_RS10845 (WM48_10830) sbmC 2187684..2188157 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17607.27 Da        Isoelectric Point: 6.9180

>NTDB_id=149014 WM48_RS10800 WP_001541535.1 2183167..2183643(+) (radC) [Escherichia coli strain ECONIH2]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=149014 WM48_RS10800 WP_001541535.1 2183167..2183643(+) (radC) [Escherichia coli strain ECONIH2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment