Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AB691_RS05115 | Genome accession | NZ_CP011854 |
| Coordinates | 1092365..1093231 (+) | Length | 288 a.a. |
| NCBI ID | WP_048328644.1 | Uniprot ID | - |
| Organism | Stutzerimonas stutzeri strain SLG510A3-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1087365..1098231
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB691_RS21540 | - | 1087388..1088326 (-) | 939 | WP_230678778.1 | O-antigen ligase family protein | - |
| AB691_RS22220 | - | 1088326..1088688 (+) | 363 | WP_230678780.1 | hypothetical protein | - |
| AB691_RS05100 | pilA2 | 1088690..1089115 (-) | 426 | WP_048328641.1 | pilin | Machinery gene |
| AB691_RS05105 (AB691_1056) | pilB | 1089437..1091140 (+) | 1704 | WP_048328642.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB691_RS05110 (AB691_1057) | pilC | 1091143..1092360 (+) | 1218 | WP_048328643.1 | type II secretion system F family protein | Machinery gene |
| AB691_RS05115 (AB691_1058) | pilD | 1092365..1093231 (+) | 867 | WP_048328644.1 | prepilin peptidase | Machinery gene |
| AB691_RS05120 (AB691_1059) | coaE | 1093363..1093971 (+) | 609 | WP_014595960.1 | dephospho-CoA kinase | - |
| AB691_RS05125 | yacG | 1093968..1094165 (+) | 198 | WP_041771656.1 | DNA gyrase inhibitor YacG | - |
| AB691_RS05130 (AB691_1060) | - | 1094178..1094858 (-) | 681 | WP_013981946.1 | energy-coupling factor ABC transporter permease | - |
| AB691_RS05135 (AB691_1061) | - | 1094915..1095955 (-) | 1041 | WP_048328645.1 | NADP(H)-dependent aldo-keto reductase | - |
| AB691_RS05140 (AB691_1062) | rplM | 1096370..1096798 (+) | 429 | WP_003287302.1 | 50S ribosomal protein L13 | - |
| AB691_RS05145 (AB691_1063) | rpsI | 1096814..1097206 (+) | 393 | WP_013981948.1 | 30S ribosomal protein S9 | - |
| AB691_RS05150 | petA | 1097461..1098054 (+) | 594 | WP_013981949.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 32105.07 Da Isoelectric Point: 7.2758
>NTDB_id=149015 AB691_RS05115 WP_048328644.1 1092365..1093231(+) (pilD) [Stutzerimonas stutzeri strain SLG510A3-8]
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIVERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGGMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANNFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIVERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGGMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANNFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF
Nucleotide
Download Length: 867 bp
>NTDB_id=149015 AB691_RS05115 WP_048328644.1 1092365..1093231(+) (pilD) [Stutzerimonas stutzeri strain SLG510A3-8]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGTGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCT
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGGGA
TGCTTCTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGTTGCCTGACTCGCTGGTGCTG
CCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTGCTTTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
TGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACACCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTGA
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGTGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCT
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGGGA
TGCTTCTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGTTGCCTGACTCGCTGGTGCTG
CCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTGCTTTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
TGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACACCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
57.455 |
95.486 |
0.549 |
| pilD | Vibrio campbellii strain DS40M4 |
57.299 |
95.139 |
0.545 |
| pilD | Acinetobacter baumannii D1279779 |
51.799 |
96.528 |
0.5 |
| pilD | Acinetobacter nosocomialis M2 |
51.799 |
96.528 |
0.5 |
| pilD | Neisseria gonorrhoeae MS11 |
54.373 |
91.319 |
0.497 |