Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IMCC21906_RS06040 Genome accession   NZ_CP011477
Coordinates   1318538..1319752 (-) Length   404 a.a.
NCBI ID   WP_047011416.1    Uniprot ID   -
Organism   Spongiibacter sp. IMCC21906     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313538..1324752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC21906_RS06015 (IMCC21906_01226) argJ 1314219..1315439 (+) 1221 WP_047011411.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  IMCC21906_RS06020 (IMCC21906_01227) mutT 1315420..1315833 (+) 414 WP_047011412.1 8-oxo-dGTP diphosphatase MutT -
  IMCC21906_RS06025 (IMCC21906_01228) - 1316749..1316964 (-) 216 WP_047011413.1 DNA gyrase inhibitor YacG -
  IMCC21906_RS06030 (IMCC21906_01229) coaE 1316961..1317566 (-) 606 WP_047011414.1 dephospho-CoA kinase -
  IMCC21906_RS06035 (IMCC21906_01230) pilD 1317614..1318483 (-) 870 WP_047011415.1 A24 family peptidase Machinery gene
  IMCC21906_RS06040 (IMCC21906_01231) pilC 1318538..1319752 (-) 1215 WP_047011416.1 type II secretion system F family protein Machinery gene
  IMCC21906_RS06045 (IMCC21906_01232) pilB 1319756..1321474 (-) 1719 WP_047011417.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IMCC21906_RS06050 (IMCC21906_01233) - 1322189..1322662 (+) 474 WP_047011418.1 pilin -
  IMCC21906_RS06055 (IMCC21906_01234) - 1322666..1324135 (+) 1470 WP_082117378.1 O-antigen ligase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43562.10 Da        Isoelectric Point: 9.6885

>NTDB_id=146163 IMCC21906_RS06040 WP_047011416.1 1318538..1319752(-) (pilC) [Spongiibacter sp. IMCC21906]
MATASKTQVFVWQGVDKQGRSTRGELSASSIALAKAQLRKQGIAAKQVKRKPKPLFSSKKAIKPEDIAIFTRQMATMLKA
GVPLVQSFDIVAEGASNPTLQDLVIEIKNDVASGGGFAAACAKHPKYFDDLFCSLVDSGEQSGTLEIMLDRVATYKEKTE
ALKKKIKKALTYPIAVIVVAIIVTSILLIKVVPTFAQTFESFGSDLPAFTKFVVGLSEWAQANWLIVLGIMIVAGFAFKQ
ARRRSKPFSDWVDKITLKIPIIGDIVYNAVIARFSRTLATTFAAGVPLVDALTSVAGAAGNAVYNKAILQIRDDVTTGQT
LTSSIRFTNLFPSMLLQMVSIGEESGSLDEMLDKVATHYEEAVDNAVDTLTSLLEPLIMSVLGVLVGGLMIAMYLPIFML
GSAI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=146163 IMCC21906_RS06040 WP_047011416.1 1318538..1319752(-) (pilC) [Spongiibacter sp. IMCC21906]
ATGGCGACAGCATCAAAGACCCAGGTTTTTGTTTGGCAGGGTGTAGACAAGCAAGGCCGAAGCACGCGGGGAGAACTCAG
TGCCTCGTCAATCGCCCTAGCTAAAGCACAGCTACGCAAGCAGGGTATTGCGGCCAAGCAGGTTAAACGCAAACCCAAGC
CGCTGTTCAGCAGTAAAAAGGCGATCAAACCAGAAGATATCGCCATTTTTACTCGCCAGATGGCCACCATGCTGAAAGCA
GGTGTGCCGCTGGTTCAAAGTTTCGATATTGTTGCCGAAGGTGCCAGCAACCCTACCCTGCAAGACTTGGTCATTGAAAT
AAAAAATGATGTCGCCTCCGGTGGCGGCTTTGCCGCAGCCTGTGCCAAACACCCCAAATATTTCGATGATTTATTTTGCA
GTTTGGTCGACTCTGGTGAGCAATCGGGCACCTTGGAGATCATGTTAGATCGCGTGGCCACCTATAAAGAAAAAACCGAA
GCCCTTAAAAAGAAAATCAAGAAAGCACTCACCTACCCTATTGCCGTTATTGTCGTAGCCATTATTGTTACCTCGATTTT
GCTGATTAAAGTGGTGCCCACTTTTGCTCAAACCTTTGAGAGTTTTGGCTCAGACCTACCGGCCTTTACCAAGTTTGTCG
TGGGGCTGTCGGAATGGGCACAAGCCAACTGGCTGATTGTATTGGGGATAATGATTGTTGCTGGCTTCGCCTTTAAGCAG
GCACGGCGCCGTTCCAAGCCCTTTTCTGACTGGGTCGATAAAATAACCCTGAAGATCCCCATCATTGGCGATATTGTTTA
CAACGCCGTAATAGCGCGCTTTTCACGAACCCTGGCAACCACCTTTGCCGCTGGTGTGCCGCTGGTAGATGCCCTCACCT
CTGTAGCGGGGGCCGCGGGCAACGCCGTATACAACAAGGCAATACTGCAAATTAGAGACGACGTAACCACAGGGCAAACC
CTAACGTCATCGATTCGCTTCACCAATCTGTTCCCATCGATGTTGTTGCAGATGGTGTCCATTGGTGAAGAATCCGGCTC
TCTGGATGAAATGCTGGACAAGGTCGCCACCCATTATGAAGAAGCCGTAGACAACGCCGTTGATACACTAACATCCCTGT
TAGAGCCGCTGATTATGTCGGTGCTTGGGGTATTAGTCGGCGGCTTGATGATTGCTATGTACCTGCCCATATTTATGTTG
GGGTCCGCAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.843

99.257

0.624
  pilC Acinetobacter baylyi ADP1

61.084

100

0.614
  pilC Acinetobacter baumannii D1279779

60.202

98.267

0.592
  pilC Legionella pneumophila strain ERS1305867

57.071

98.02

0.559
  pilG Neisseria gonorrhoeae MS11

46.42

100

0.465
  pilG Neisseria meningitidis 44/76-A

45.813

100

0.46
  pilC Vibrio cholerae strain A1552

41.414

98.02

0.406
  pilC Vibrio campbellii strain DS40M4

40.148

100

0.403
  pilC Thermus thermophilus HB27

36.228

99.752

0.361

Multiple sequence alignment