Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMCC21906_RS06035 Genome accession   NZ_CP011477
Coordinates   1317614..1318483 (-) Length   289 a.a.
NCBI ID   WP_047011415.1    Uniprot ID   -
Organism   Spongiibacter sp. IMCC21906     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312614..1323483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC21906_RS06015 (IMCC21906_01226) argJ 1314219..1315439 (+) 1221 WP_047011411.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  IMCC21906_RS06020 (IMCC21906_01227) mutT 1315420..1315833 (+) 414 WP_047011412.1 8-oxo-dGTP diphosphatase MutT -
  IMCC21906_RS06025 (IMCC21906_01228) - 1316749..1316964 (-) 216 WP_047011413.1 DNA gyrase inhibitor YacG -
  IMCC21906_RS06030 (IMCC21906_01229) coaE 1316961..1317566 (-) 606 WP_047011414.1 dephospho-CoA kinase -
  IMCC21906_RS06035 (IMCC21906_01230) pilD 1317614..1318483 (-) 870 WP_047011415.1 A24 family peptidase Machinery gene
  IMCC21906_RS06040 (IMCC21906_01231) pilC 1318538..1319752 (-) 1215 WP_047011416.1 type II secretion system F family protein Machinery gene
  IMCC21906_RS06045 (IMCC21906_01232) pilB 1319756..1321474 (-) 1719 WP_047011417.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IMCC21906_RS06050 (IMCC21906_01233) - 1322189..1322662 (+) 474 WP_047011418.1 pilin -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31740.89 Da        Isoelectric Point: 7.3876

>NTDB_id=146162 IMCC21906_RS06035 WP_047011415.1 1317614..1318483(-) (pilD) [Spongiibacter sp. IMCC21906]
MSILQLADSHPLLLITIIGGFGLLFGSFFNVVIYRLPKIMERNWHQECRLLLELPEQAETPFGLSLPHSHCPKCNAAVKA
WQNIPVVSFLLLRGRCASCKTSIGLRYPAIEIATSALAVFSLLHFGLSPQGFAVVIFSWILLILTMIDIDHQLLPDQLTL
PLLWLGLLFHSITGLLPLSDVVWGAIAGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQMLPLVIILSSVVGA
VLGVISLSLAGKSKSQPIPFGPYLAIAGWVAMFWGQEILDQYLQFAGLG

Nucleotide


Download         Length: 870 bp        

>NTDB_id=146162 IMCC21906_RS06035 WP_047011415.1 1317614..1318483(-) (pilD) [Spongiibacter sp. IMCC21906]
ATGAGTATCCTGCAACTGGCGGATAGCCATCCACTTTTGCTAATCACAATTATTGGCGGTTTTGGGCTGTTATTTGGCAG
TTTTTTTAATGTGGTTATCTACCGCCTACCCAAAATAATGGAGCGGAATTGGCACCAAGAATGCCGCTTATTGCTAGAAC
TCCCTGAGCAAGCAGAAACGCCCTTCGGTTTGTCTCTACCCCACTCTCACTGCCCCAAGTGCAATGCTGCCGTTAAAGCT
TGGCAAAACATTCCCGTTGTCAGTTTTTTACTGCTGCGGGGTCGCTGCGCCAGTTGTAAAACAAGTATTGGTTTACGTTA
TCCCGCCATTGAAATAGCGACCTCGGCATTAGCGGTATTTTCACTGCTGCATTTTGGACTGAGCCCACAGGGTTTTGCCG
TCGTTATTTTTAGTTGGATCTTGCTGATTTTAACGATGATTGACATCGATCATCAGCTATTGCCCGACCAGCTTACGCTG
CCGTTATTATGGCTGGGGCTGCTTTTCCATAGCATCACCGGCCTATTACCGTTGAGCGATGTCGTTTGGGGCGCTATAGC
AGGCTACCTCTCTCTGTGGTCCGTATTCTGGCTGTTTAAACTCCTCACTGGAAAGGAGGGTATGGGTTATGGCGACTTCA
AGCTGTTAGCGGCCCTTGGTGCTTGGCTGGGCTGGCAAATGCTGCCACTGGTCATTATTCTGTCGTCGGTCGTCGGTGCA
GTGTTAGGCGTGATAAGCCTAAGCTTGGCGGGCAAGTCTAAAAGCCAACCGATTCCTTTTGGTCCCTACTTAGCGATTGC
CGGCTGGGTGGCGATGTTCTGGGGCCAGGAAATACTGGATCAATATCTGCAGTTTGCCGGTTTGGGCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.147

98.962

0.526
  pilD Vibrio campbellii strain DS40M4

52.265

99.308

0.519
  pilD Acinetobacter baumannii D1279779

50.379

91.349

0.46
  pilD Acinetobacter nosocomialis M2

50

91.349

0.457
  pilD Neisseria gonorrhoeae MS11

49.402

86.851

0.429

Multiple sequence alignment