Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TVD_RS02260 Genome accession   NZ_CP011367
Coordinates   480206..481417 (-) Length   403 a.a.
NCBI ID   WP_018144450.1    Uniprot ID   A0A0G3G1L6
Organism   Thioalkalivibrio versutus strain D301     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475206..486417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS02235 (TVD_02235) argJ 475656..476867 (+) 1212 WP_047250711.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  TVD_RS02240 (TVD_02240) - 476848..477822 (+) 975 WP_047250712.1 Nudix family hydrolase -
  TVD_RS02245 (TVD_02245) zapD 477855..478625 (-) 771 WP_018939032.1 cell division protein ZapD -
  TVD_RS02250 (TVD_02250) coaE 478685..479329 (-) 645 WP_019563203.1 dephospho-CoA kinase -
  TVD_RS02255 (TVD_02255) pilD 479339..480202 (-) 864 WP_047250713.1 prepilin peptidase Machinery gene
  TVD_RS02260 (TVD_02260) pilC 480206..481417 (-) 1212 WP_018144450.1 type II secretion system F family protein Machinery gene
  TVD_RS02265 (TVD_02265) pilB 481461..483179 (-) 1719 WP_047250714.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TVD_RS02285 (TVD_02285) tuf 483800..484990 (+) 1191 WP_018168213.1 elongation factor Tu -
  TVD_RS02295 (TVD_02295) secE 485190..485555 (+) 366 WP_018167854.1 preprotein translocase subunit SecE -
  TVD_RS02300 (TVD_02300) nusG 485573..486106 (+) 534 WP_017940468.1 transcription termination/antitermination protein NusG -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44009.57 Da        Isoelectric Point: 9.3433

>NTDB_id=145153 TVD_RS02260 WP_018144450.1 480206..481417(-) (pilC) [Thioalkalivibrio versutus strain D301]
MADSGTIYTWEGLNKNGARIKGETPADNEATARAELRKNGINVIKIRKKPKSLLSGGKKKVVPADIAYFLRQMTTMLESG
VPLVQAFEIVGRGNEKPAMRDLVLKLKADVEGGETFAQALSKHPRHFDDLVTNLVEAGEQAGTLETLLDKVATYKEKTEA
LKGKIKKALFYPAAVVVVAIVVTAILLIYVVPQFEALFTGFGADLPVFTRMVVDLSEFTQSWWWAILGVMVAIGFVFVQA
RRRLPRFARFLDIMVLKAPAFGPILRKAAIARFARTLSTMFSAGVPLVDALTSVSGATGNAVYREATLRMRDETEAGGQL
QWSMRNTAVFPNMVVQMVAIGEESGSLDSMLSKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLVGGLVIAMYLPIFQMG
QVI

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=145153 TVD_RS02260 WP_018144450.1 480206..481417(-) (pilC) [Thioalkalivibrio versutus strain D301]
ATGGCCGACTCCGGGACGATCTACACCTGGGAAGGACTGAACAAGAACGGCGCCCGGATCAAGGGCGAGACTCCGGCCGA
CAACGAGGCCACGGCCCGTGCCGAGCTGCGCAAGAACGGCATCAACGTCATCAAGATCCGCAAGAAGCCAAAGTCGCTTC
TCTCCGGTGGAAAAAAGAAGGTCGTCCCCGCGGACATCGCCTACTTCCTGCGCCAGATGACCACGATGCTGGAGTCCGGC
GTGCCCCTGGTGCAGGCCTTCGAGATCGTCGGCCGCGGGAACGAGAAGCCCGCGATGCGCGATCTGGTCCTGAAACTGAA
GGCAGACGTCGAGGGCGGCGAGACGTTTGCCCAGGCCCTGTCCAAGCACCCGAGACATTTCGACGACCTGGTCACCAATC
TGGTCGAGGCCGGCGAGCAGGCGGGGACACTCGAGACCCTGCTGGACAAGGTCGCCACCTACAAGGAAAAGACCGAGGCC
CTGAAGGGCAAGATCAAGAAGGCCCTGTTCTATCCGGCCGCAGTGGTTGTGGTCGCCATCGTGGTGACCGCGATCCTGCT
GATCTACGTGGTCCCGCAGTTCGAGGCCCTGTTTACCGGGTTCGGTGCCGACCTCCCGGTATTCACCCGCATGGTGGTCG
ACCTCTCGGAGTTCACCCAGAGCTGGTGGTGGGCCATCCTCGGGGTCATGGTCGCCATCGGATTCGTCTTCGTTCAGGCC
CGGCGGCGGCTGCCACGCTTCGCCCGTTTCCTCGACATCATGGTCCTCAAGGCCCCGGCTTTTGGCCCGATCCTGCGCAA
GGCCGCCATCGCCCGCTTTGCGCGAACGCTGTCGACCATGTTCTCCGCCGGGGTGCCGCTGGTGGATGCCCTGACCTCGG
TCTCCGGCGCCACCGGCAACGCCGTCTACCGAGAAGCCACCCTGCGCATGCGCGACGAGACCGAGGCCGGCGGCCAATTG
CAGTGGTCCATGCGCAATACCGCCGTGTTCCCCAACATGGTGGTGCAGATGGTCGCGATTGGCGAGGAATCCGGCTCGCT
GGATTCAATGCTGTCGAAAGTCGCGGATTTCTACGAGGAAGAGGTCGACAACGCCGTGGACAGCCTGTCCAGCCTGCTGG
AACCGCTGATCATGGTGGTCCTCGGCGTGCTGGTCGGCGGCCTGGTCATCGCCATGTACCTGCCCATCTTCCAGATGGGT
CAGGTGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3G1L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.302

98.759

0.596
  pilC Acinetobacter baumannii D1279779

57.683

98.511

0.568
  pilC Acinetobacter baylyi ADP1

57.538

98.759

0.568
  pilC Legionella pneumophila strain ERS1305867

57.323

98.263

0.563
  pilG Neisseria gonorrhoeae MS11

45

99.256

0.447
  pilG Neisseria meningitidis 44/76-A

44.75

99.256

0.444
  pilC Vibrio campbellii strain DS40M4

44.14

99.504

0.439
  pilC Vibrio cholerae strain A1552

42.432

100

0.424
  pilC Thermus thermophilus HB27

37.232

100

0.387

Multiple sequence alignment