Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AVM03_RS01985 Genome accession   NZ_CP013727
Coordinates   419940..420389 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 414940..425389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS01945 (AVM03_01940) ctaE 415070..415693 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  AVM03_RS01950 (AVM03_01945) ctaF 415696..416028 (+) 333 WP_015388278.1 cytochrome c oxidase subunit IVB -
  AVM03_RS01955 (AVM03_01950) ctaG 416053..416937 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  AVM03_RS01960 (AVM03_01955) - 416971..417330 (-) 360 WP_003154479.1 YugN family protein -
  AVM03_RS01965 (AVM03_01960) - 417471..417914 (+) 444 WP_003154478.1 CBS domain-containing protein -
  AVM03_RS01970 (AVM03_01965) - 417999..419039 (+) 1041 WP_003154477.1 CAP domain-containing protein -
  AVM03_RS01975 (AVM03_01970) - 419204..419614 (+) 411 WP_014304959.1 YlbD family protein -
  AVM03_RS01980 (AVM03_01975) - 419630..419869 (+) 240 WP_003154475.1 YlbE-like family protein -
  AVM03_RS01985 (AVM03_01980) ylbF 419940..420389 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  AVM03_RS01990 (AVM03_01985) - 420448..420720 (+) 273 WP_025851397.1 YlbG family protein -
  AVM03_RS01995 (AVM03_01990) - 420811..421020 (+) 210 WP_015388275.1 hypothetical protein -
  AVM03_RS02000 (AVM03_01995) rsmD 421020..421574 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AVM03_RS02005 (AVM03_02000) coaD 421579..422061 (+) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  AVM03_RS02010 (AVM03_02005) ylbJ 422080..423306 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  AVM03_RS02015 (AVM03_02010) - 423486..424265 (+) 780 WP_058906002.1 patatin-like phospholipase family protein -
  AVM03_RS02020 (AVM03_02015) sepM 424271..425293 (+) 1023 WP_058906003.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=142126 AVM03_RS01985 WP_003154472.1 419940..420389(+) (ylbF) [Bacillus amyloliquefaciens strain MBE1283]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=142126 AVM03_RS01985 WP_003154472.1 419940..420389(+) (ylbF) [Bacillus amyloliquefaciens strain MBE1283]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAACAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879

Multiple sequence alignment