Detailed information
Bioinformatically predicted
Overview
| Name | sepM | Type | Regulator |
| Locus tag | AVM03_RS02020 | Genome accession | NZ_CP013727 |
| Coordinates | 424271..425293 (+) | Length | 340 a.a. |
| NCBI ID | WP_058906003.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain MBE1283 | ||
| Function | processing of CSP (predicted from homology) Competence regulation |
||
Genomic Context
Location: 419271..430293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVM03_RS01980 (AVM03_01975) | - | 419630..419869 (+) | 240 | WP_003154475.1 | YlbE-like family protein | - |
| AVM03_RS01985 (AVM03_01980) | ylbF | 419940..420389 (+) | 450 | WP_003154472.1 | YlbF family regulator | Regulator |
| AVM03_RS01990 (AVM03_01985) | - | 420448..420720 (+) | 273 | WP_025851397.1 | YlbG family protein | - |
| AVM03_RS01995 (AVM03_01990) | - | 420811..421020 (+) | 210 | WP_015388275.1 | hypothetical protein | - |
| AVM03_RS02000 (AVM03_01995) | rsmD | 421020..421574 (+) | 555 | WP_003154468.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| AVM03_RS02005 (AVM03_02000) | coaD | 421579..422061 (+) | 483 | WP_003154467.1 | pantetheine-phosphate adenylyltransferase | - |
| AVM03_RS02010 (AVM03_02005) | ylbJ | 422080..423306 (-) | 1227 | WP_003154466.1 | sporulation integral membrane protein YlbJ | - |
| AVM03_RS02015 (AVM03_02010) | - | 423486..424265 (+) | 780 | WP_058906002.1 | patatin-like phospholipase family protein | - |
| AVM03_RS02020 (AVM03_02015) | sepM | 424271..425293 (+) | 1023 | WP_058906003.1 | SepM family pheromone-processing serine protease | Regulator |
| AVM03_RS02025 (AVM03_02020) | - | 425312..426559 (-) | 1248 | WP_058906004.1 | nucleotidyltransferase | - |
| AVM03_RS02030 (AVM03_02025) | - | 426768..427286 (+) | 519 | WP_003154459.1 | YceD family protein | - |
| AVM03_RS19365 | rpmF | 427308..427487 (+) | 180 | WP_003154457.1 | 50S ribosomal protein L32 | - |
| AVM03_RS02035 (AVM03_02030) | gerR | 427645..428220 (+) | 576 | WP_003154450.1 | sporulation-specific transcriptional regulator GerR | - |
| AVM03_RS02040 (AVM03_02035) | - | 428261..428743 (-) | 483 | WP_015388272.1 | N-acetyltransferase | - |
| AVM03_RS02045 (AVM03_02040) | - | 428906..429787 (+) | 882 | WP_058906005.1 | 2-dehydropantoate 2-reductase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 37408.93 Da Isoelectric Point: 7.3848
>NTDB_id=142127 AVM03_RS02020 WP_058906003.1 424271..425293(+) (sepM) [Bacillus amyloliquefaciens strain MBE1283]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKSDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKSDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST
Nucleotide
Download Length: 1023 bp
>NTDB_id=142127 AVM03_RS02020 WP_058906003.1 424271..425293(+) (sepM) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGATC
GGAACGTGAAAGTGAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAATCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGATC
GGAACGTGAAAGTGAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAATCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sepM | Streptococcus mutans UA159 |
38.663 |
100 |
0.391 |