Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PTET_RS13875 Genome accession   NZ_CP011041
Coordinates   2974998..2976218 (+) Length   406 a.a.
NCBI ID   WP_096038785.1    Uniprot ID   A0AA37S1A0
Organism   Pseudoalteromonas tetraodonis strain GFC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2969998..2981218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTET_RS13855 (PTET_a3095) ampE 2971059..2971910 (-) 852 WP_096038781.1 beta-lactamase regulator AmpE -
  PTET_RS13860 (PTET_a3096) ampD 2972198..2972743 (-) 546 WP_096038782.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PTET_RS13865 (PTET_a3097) nadC 2973148..2973993 (+) 846 WP_096038783.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PTET_RS13870 (PTET_a3098) - 2974514..2974951 (+) 438 WP_407681291.1 pilin -
  PTET_RS13875 (PTET_a3099) pilC 2974998..2976218 (+) 1221 WP_096038785.1 type II secretion system F family protein Machinery gene
  PTET_RS13880 (PTET_a3100) pilD 2976443..2977354 (+) 912 WP_096038786.1 prepilin peptidase Machinery gene
  PTET_RS13885 (PTET_a3101) coaE 2977357..2977986 (+) 630 WP_096038787.1 dephospho-CoA kinase -
  PTET_RS13890 (PTET_a3102) pilB 2978120..2979796 (+) 1677 WP_096038788.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PTET_RS13895 (PTET_a3104) yacG 2979862..2980092 (+) 231 WP_008466423.1 DNA gyrase inhibitor YacG -
  PTET_RS13900 (PTET_a3105) - 2980435..2980899 (-) 465 WP_008114914.1 periplasmic heavy metal sensor -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43985.04 Da        Isoelectric Point: 9.9603

>NTDB_id=141711 PTET_RS13875 WP_096038785.1 2974998..2976218(+) (pilC) [Pseudoalteromonas tetraodonis strain GFC]
MKKTNKLDTFQWIGVSARGKRLEGELAGSSIALVKAQLRKQGITPSKVKRKAKPLFGLQSVQKITPKDIAIVTRQIATML
MAGVPLIQSIEMIGSGSTNKSVSKLMAVIGDEVKAGQPLSMALRKHPRYFDDLYCDLVASGEQSGSLDKIFDRVALYKEK
SEALKSKIKKAMFYPAAVLVVAFIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIGISEFMQANWWIALIGVVAFGYIF
KEVHLRSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAIYRYAILEIKAEVSSG
NQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYLPIF
QLGSVI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=141711 PTET_RS13875 WP_096038785.1 2974998..2976218(+) (pilC) [Pseudoalteromonas tetraodonis strain GFC]
ATGAAAAAAACAAATAAGCTAGATACATTTCAATGGATAGGTGTAAGCGCAAGAGGTAAACGTCTTGAAGGAGAGCTAGC
GGGTTCTAGCATAGCCTTGGTGAAAGCCCAATTACGTAAACAAGGTATTACTCCCTCAAAAGTCAAACGAAAAGCAAAAC
CTTTGTTTGGCCTACAAAGCGTGCAAAAAATCACCCCAAAAGATATTGCTATAGTTACTCGACAAATAGCTACTATGCTT
ATGGCGGGTGTGCCGTTGATACAATCCATAGAAATGATAGGTTCTGGTTCCACCAACAAAAGTGTGAGTAAATTAATGGC
CGTTATTGGTGATGAAGTGAAAGCTGGTCAACCATTATCAATGGCACTCAGAAAACATCCCCGTTATTTTGATGATTTAT
ATTGCGATTTAGTAGCATCAGGCGAGCAGTCGGGCTCGCTTGATAAAATATTTGATCGCGTTGCGCTTTATAAAGAAAAG
TCAGAAGCGCTAAAATCAAAAATTAAAAAAGCCATGTTTTATCCAGCAGCAGTTTTAGTTGTGGCATTCATTGTTACCTC
TATTTTGTTAATTTTTGTAGTACCGCAATTTCAGGATATTTTTGCAGGTTTTGGTGCAGAACTGCCTGCTTTTACTTTAT
TTGTGATTGGTATTTCAGAATTTATGCAAGCCAACTGGTGGATAGCCCTAATTGGCGTTGTGGCATTCGGTTATATATTT
AAAGAAGTACATTTAAGAAGTTTAAAACTGCGTGATGCCACTGACCGCGCCATACTTAAACTCCCGGTTATTGGCATGAT
ACTTAATAAAGCAGCGGTGGCGCGTTATGCACGTACTTTATCGACCACCTTTGCTGCGGGTGTACCATTGGTGGATGCTT
TGGATTCTGCAGCAGGTGCCTCTGGTAACGCAATTTACCGGTATGCTATTTTAGAAATAAAAGCCGAGGTAAGCTCAGGC
AATCAAATGAACTGGGCGATGCGTAATTCAAAAATATTCCCAGATATGGTAATACAAATGGTTGCCATTGGTGAAGAGTC
AGGTTCGCTTGATGGCATGCTCGCAAAAGTAGCAACTATCTACGAGCAAGAAGTAGATGACGCGGTAGATGGCTTATCAA
GCCTATTAGAGCCGTTAATAATGGCAGTACTCGGCGTACTAGTCGGTGGCTTAATTGTGGCCATGTACTTACCTATTTTC
CAACTAGGTTCTGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.716

99.754

0.626
  pilC Acinetobacter baylyi ADP1

55.062

99.754

0.549
  pilC Acinetobacter baumannii D1279779

55.062

99.754

0.549
  pilC Legionella pneumophila strain ERS1305867

54.545

100

0.547
  pilC Vibrio cholerae strain A1552

44.828

100

0.448
  pilC Vibrio campbellii strain DS40M4

43.21

99.754

0.431
  pilG Neisseria meningitidis 44/76-A

43.99

96.305

0.424
  pilG Neisseria gonorrhoeae MS11

43.734

96.305

0.421
  pilC Thermus thermophilus HB27

36.908

98.768

0.365

Multiple sequence alignment