Detailed information NTG0141712

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PTET_RS13880
• Genome accession: NZ_CP011041
• Coordinates: 2976443..2977354 (+)
• Length: 303 a.a.
• NCBI ID: WP_096038786.1
• Uniprot ID: A0AA37S1E2
• Organism: Pseudoalteromonas tetraodonis strain GFC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2971443..2982354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTET_RS13860 (PTET_a3096)	ampD	2972198..2972743 (-)	546	WP_096038782.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PTET_RS13865 (PTET_a3097)	nadC	2973148..2973993 (+)	846	WP_096038783.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PTET_RS13870 (PTET_a3098)	-	2974514..2974951 (+)	438	WP_407681291.1	pilin	-
PTET_RS13875 (PTET_a3099)	pilC	2974998..2976218 (+)	1221	WP_096038785.1	type II secretion system F family protein	Machinery gene
PTET_RS13880 (PTET_a3100)	pilD	2976443..2977354 (+)	912	WP_096038786.1	prepilin peptidase	Machinery gene
PTET_RS13885 (PTET_a3101)	coaE	2977357..2977986 (+)	630	WP_096038787.1	dephospho-CoA kinase	-
PTET_RS13890 (PTET_a3102)	pilB	2978120..2979796 (+)	1677	WP_096038788.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PTET_RS13895 (PTET_a3104)	yacG	2979862..2980092 (+)	231	WP_008466423.1	DNA gyrase inhibitor YacG	-
PTET_RS13900 (PTET_a3105)	-	2980435..2980899 (-)	465	WP_008114914.1	periplasmic heavy metal sensor	-
PTET_RS13905 (PTET_a3106)	-	2981067..2981756 (+)	690	WP_008114913.1	response regulator transcription factor	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33498.86 Da
• Isoelectric Point: 7.8222

>NTDB_id=141712 PTET_RS13880 WP_096038786.1 2976443..2977354(+) (pilD) [Pseudoalteromonas tetraodonis strain GFC]
MHTFFIDITAAMQSHLWFYLTTIGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAKQTTSQTTDTFNLV
KPNSCCPKCKAAIKPWQNIPIISWLFLKGKCATCNNPISVRYPIVEAITAILSLVVAYTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGAILGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWFTMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=141712 PTET_RS13880 WP_096038786.1 2976443..2977354(+) (pilD) [Pseudoalteromonas tetraodonis strain GFC]
ATGCATACTTTTTTTATTGATATCACCGCCGCAATGCAAAGCCATTTATGGTTTTACTTAACCACGATTGGCCTAGTGAG
TTTATGTATTGGTAGCTTTTTAAATGTGGTGATTTATCGCTTGCCACTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTAAACAGACCACCTCACAAACTACTGACACGTTTAACTTAGTT
AAACCCAACTCATGTTGCCCAAAGTGCAAAGCGGCGATTAAACCGTGGCAAAATATTCCCATTATTAGTTGGTTATTTTT
AAAAGGTAAATGCGCAACCTGTAACAACCCAATATCAGTACGTTACCCAATCGTTGAAGCCATTACTGCTATTTTAAGTT
TAGTGGTTGCCTACACCTTTGGCGCTACAGAGCAGGCTTTATTATACATAGTAGTTACTTGGGCGTTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCGGACCAGCTTACTTTGCCACTTTTATGGTTAGCGTTAATCGCCTCAGTTAT
GGGTTATACCATTGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTATGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTGGCGGTGTTTGGAGCCATACTGGGTTGG
CAATCGTTATTGACCATTATTTTGCTCTCAAGCGTAGTTGGCGCTGTAATTGGCATTGCTCTACTGAGTATTCAAGGTAA
AGACAAAGCAACCCCCATTCCTTTTGGTCCTTACTTAGCAATAGCCGGTTGGTTCACTATGCTATGGGGCACGCAACTGC
AAAACAGCTATTTTAATTTTATTGGCTACTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (151-259)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.853	96.7	0.492
pilD	Acinetobacter nosocomialis M2	50.853	96.7	0.492
pilD	Vibrio cholerae strain A1552	51.568	94.719	0.488
pilD	Vibrio campbellii strain DS40M4	49.31	95.71	0.472
pilD	Neisseria gonorrhoeae MS11	44.569	88.119	0.393