Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSPO_RS10600 Genome accession   NZ_CP011039
Coordinates   2285657..2286886 (+) Length   409 a.a.
NCBI ID   WP_010561746.1    Uniprot ID   -
Organism   Pseudoalteromonas spongiae UST010723-006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280657..2291886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPO_RS22010 (PSPO_a2377) - 2281387..2281782 (+) 396 WP_010561742.1 type IV pilin protein -
  PSPO_RS10585 (PSPO_a2378) - 2281841..2282953 (+) 1113 WP_010561743.1 methyltransferase family protein -
  PSPO_RS10590 (PSPO_a2380) - 2282944..2283828 (+) 885 WP_010561744.1 hypothetical protein -
  PSPO_RS10595 (PSPO_a2381) pilB 2283901..2285586 (+) 1686 WP_010561745.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSPO_RS10600 (PSPO_a2382) pilC 2285657..2286886 (+) 1230 WP_010561746.1 type II secretion system F family protein Machinery gene
  PSPO_RS10605 (PSPO_a2383) pilD 2286893..2287777 (+) 885 WP_010561747.1 prepilin peptidase Machinery gene
  PSPO_RS10610 (PSPO_a2384) coaE 2287779..2288372 (+) 594 WP_010561748.1 dephospho-CoA kinase -
  PSPO_RS10615 (PSPO_a2387) pilB 2288534..2290216 (+) 1683 WP_010561749.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSPO_RS10620 (PSPO_a2388) yacG 2290384..2290617 (+) 234 WP_010561750.1 DNA gyrase inhibitor YacG -
  PSPO_RS10625 (PSPO_a2389) - 2290634..2291356 (-) 723 WP_010561751.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44349.00 Da        Isoelectric Point: 9.4774

>NTDB_id=141688 PSPO_RS10600 WP_010561746.1 2285657..2286886(+) (pilC) [Pseudoalteromonas spongiae UST010723-006]
MAKKENNKGLTTFSWVGVNARGKRMEGELNGPSIAIVKAQLRKQGITPSKVKRKSQTFGMSSAPKITPRDIAVLTRQIAT
MLTAGVSLIQALDMIANGSENKSLQKLVVKIADEVKAGDPLSKALRANPKYFDELYCDLVESGEQSGALDHIFDRVALYK
EKAEALKSKIKKAMFYPIAVLTVAFIVTVILLIFVVPQFEQVFAGFGAELPAFTQMIVSISEFMQAYWWVVFGIIGISFF
LFKKAHQSNKQVRDNTDRAILKLPIVGMILNKAAVARYARTLSTTFAAGVPLVDALQSAAGASGNAVYRDAILEIKNEVS
SGNQMNFAMKNTGVFPDMVIQMVAIGEESGAIDDMLGKVASIYEQEVDDAVDALSSLLEPLIMVVLGVLVGGLIVGMYLP
IFQLGQVIG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=141688 PSPO_RS10600 WP_010561746.1 2285657..2286886(+) (pilC) [Pseudoalteromonas spongiae UST010723-006]
ATGGCAAAAAAAGAGAACAATAAAGGCCTAACTACATTTTCATGGGTAGGGGTCAACGCACGCGGAAAGCGCATGGAGGG
AGAATTAAATGGCCCCAGTATCGCAATCGTAAAGGCTCAACTCCGTAAACAAGGAATCACCCCGTCCAAAGTTAAGAGAA
AATCTCAAACCTTTGGAATGAGCTCTGCTCCTAAGATAACCCCTAGAGACATCGCTGTATTAACAAGACAGATAGCAACA
ATGTTAACCGCAGGCGTATCACTAATTCAGGCCTTGGATATGATAGCTAATGGGTCCGAAAATAAATCTTTACAAAAGTT
AGTAGTTAAAATAGCTGATGAAGTTAAAGCCGGTGATCCTTTAAGTAAAGCACTACGAGCCAACCCTAAGTATTTTGATG
AACTTTACTGCGACCTTGTTGAATCAGGCGAACAATCAGGTGCACTAGATCATATATTCGATAGGGTAGCGCTATATAAA
GAAAAAGCAGAAGCCCTTAAGTCAAAAATAAAAAAGGCAATGTTTTATCCAATAGCGGTTCTTACGGTTGCATTTATCGT
AACGGTGATTTTATTAATATTCGTTGTACCACAATTTGAGCAAGTATTTGCCGGTTTCGGAGCTGAATTACCAGCTTTTA
CACAAATGATTGTGAGTATATCTGAGTTTATGCAGGCCTATTGGTGGGTGGTGTTTGGCATTATTGGAATAAGCTTTTTT
CTGTTTAAAAAAGCCCATCAATCAAACAAACAAGTTCGAGACAATACAGATAGAGCAATATTGAAGCTTCCAATTGTTGG
CATGATCCTAAACAAAGCTGCAGTAGCGCGTTATGCGCGCACTTTATCAACCACATTTGCGGCAGGTGTCCCATTGGTTG
ACGCGCTGCAATCTGCAGCCGGAGCTTCAGGAAATGCTGTATATCGAGATGCAATACTAGAAATTAAAAATGAAGTCAGC
TCTGGTAACCAAATGAACTTCGCCATGAAGAACACCGGCGTCTTTCCTGATATGGTTATCCAAATGGTAGCAATTGGTGA
AGAGTCTGGCGCAATCGACGATATGCTTGGAAAAGTTGCTAGTATTTATGAACAGGAAGTAGATGATGCTGTAGATGCAC
TTTCTAGCCTTCTTGAACCCCTCATTATGGTTGTTTTAGGTGTACTAGTTGGTGGTTTAATTGTCGGTATGTACTTACCT
ATCTTCCAATTAGGTCAAGTAATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.9

97.555

0.584
  pilC Legionella pneumophila strain ERS1305867

54.208

98.778

0.535
  pilC Acinetobacter baumannii D1279779

52.868

98.044

0.518
  pilC Acinetobacter baylyi ADP1

53

97.8

0.518
  pilC Vibrio cholerae strain A1552

45.5

97.8

0.445
  pilC Vibrio campbellii strain DS40M4

43.812

98.778

0.433
  pilG Neisseria meningitidis 44/76-A

43.077

95.355

0.411
  pilG Neisseria gonorrhoeae MS11

43.077

95.355

0.411

Multiple sequence alignment