Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PSPO_RS10605 Genome accession   NZ_CP011039
Coordinates   2286893..2287777 (+) Length   294 a.a.
NCBI ID   WP_010561747.1    Uniprot ID   -
Organism   Pseudoalteromonas spongiae UST010723-006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2281893..2292777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPO_RS10590 (PSPO_a2380) - 2282944..2283828 (+) 885 WP_010561744.1 hypothetical protein -
  PSPO_RS10595 (PSPO_a2381) pilB 2283901..2285586 (+) 1686 WP_010561745.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSPO_RS10600 (PSPO_a2382) pilC 2285657..2286886 (+) 1230 WP_010561746.1 type II secretion system F family protein Machinery gene
  PSPO_RS10605 (PSPO_a2383) pilD 2286893..2287777 (+) 885 WP_010561747.1 prepilin peptidase Machinery gene
  PSPO_RS10610 (PSPO_a2384) coaE 2287779..2288372 (+) 594 WP_010561748.1 dephospho-CoA kinase -
  PSPO_RS10615 (PSPO_a2387) pilB 2288534..2290216 (+) 1683 WP_010561749.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSPO_RS10620 (PSPO_a2388) yacG 2290384..2290617 (+) 234 WP_010561750.1 DNA gyrase inhibitor YacG -
  PSPO_RS10625 (PSPO_a2389) - 2290634..2291356 (-) 723 WP_010561751.1 hypothetical protein -
  PSPO_RS10630 (PSPO_a2390) - 2291549..2292004 (-) 456 WP_010561752.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32660.97 Da        Isoelectric Point: 6.4330

>NTDB_id=141689 PSPO_RS10605 WP_010561747.1 2286893..2287777(+) (pilD) [Pseudoalteromonas spongiae UST010723-006]
MNYIVEAFTLAPWLYCVTVFLVSICIGSFLNVVIYRLPKMMENEWKAECSLLLADNLKTPYEASTKAFNLITPSSTCPHC
NTQIKPWFNLPVFGWLFLRGKAACCGNKISVRYPSIELLTGLSGLVIAYYFGITEQAALYLILTYALISLIFIDIDHMLL
PDQITLPLLWLVLIASVMGLTIEPSQAIIGAAAGYLVFWSVYWVFKLLTGKEGMGYGDFKLMAVFGALLGWQYLPMIVLM
SSLVGAVIGVTLLSIQGKDKATPIPFGPYIAIAGWISLIWGEQIQTAYFNFLTL

Nucleotide


Download         Length: 885 bp        

>NTDB_id=141689 PSPO_RS10605 WP_010561747.1 2286893..2287777(+) (pilD) [Pseudoalteromonas spongiae UST010723-006]
ATGAATTATATTGTTGAAGCATTTACATTAGCACCTTGGCTATACTGCGTAACTGTTTTTCTAGTAAGCATATGCATCGG
CAGCTTTCTGAACGTTGTTATCTATCGTTTACCAAAAATGATGGAAAATGAGTGGAAGGCTGAATGCAGTTTGCTACTTG
CTGACAATCTCAAAACACCTTACGAGGCAAGCACAAAGGCATTCAATTTAATTACGCCTAGTTCAACCTGTCCTCACTGT
AATACACAAATTAAACCTTGGTTTAATTTGCCGGTATTTGGTTGGTTATTTTTGCGTGGTAAAGCGGCCTGCTGTGGTAA
CAAGATTTCAGTTCGCTACCCAAGCATTGAGCTTTTAACTGGTCTGTCTGGCCTTGTGATAGCGTATTATTTTGGCATAA
CTGAGCAAGCCGCTTTGTACTTAATACTGACATACGCACTAATATCACTTATTTTCATTGATATAGACCATATGTTATTG
CCAGACCAAATTACTTTGCCATTACTGTGGTTGGTATTAATAGCGTCAGTTATGGGACTTACGATTGAACCATCACAAGC
TATTATTGGTGCAGCTGCAGGCTACCTCGTTTTTTGGTCAGTATATTGGGTATTTAAATTACTTACCGGCAAAGAGGGTA
TGGGCTATGGTGACTTTAAGCTAATGGCTGTTTTTGGTGCTCTTTTAGGCTGGCAGTATTTACCCATGATAGTGTTAATG
TCGAGCCTTGTGGGCGCGGTAATTGGGGTTACGCTTCTTTCGATTCAAGGGAAAGACAAAGCAACACCGATTCCATTTGG
GCCTTATATTGCAATAGCTGGCTGGATTTCCCTGATTTGGGGTGAACAAATCCAAACCGCTTATTTTAATTTCTTAACAT
TATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(142-250)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.265

97.619

0.51
  pilD Vibrio campbellii strain DS40M4

50.694

97.959

0.497
  pilD Acinetobacter baumannii D1279779

51.282

92.857

0.476
  pilD Acinetobacter nosocomialis M2

50.73

93.197

0.473
  pilD Neisseria gonorrhoeae MS11

43.431

93.197

0.405

Multiple sequence alignment