Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PARC_RS15510 Genome accession   NZ_CP011025
Coordinates   3422046..3423269 (+) Length   407 a.a.
NCBI ID   WP_010553352.1    Uniprot ID   A0A290SA32
Organism   Pseudoalteromonas arctica A 37-1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417046..3428269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARC_RS15485 - 3418007..3418459 (+) 453 WP_024590627.1 transposase -
  PARC_RS15490 (PARC_a3511) ampE 3418534..3419385 (-) 852 WP_010553348.1 beta-lactamase regulator AmpE -
  PARC_RS15495 (PARC_a3512) ampD 3419398..3419952 (-) 555 WP_010553349.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PARC_RS15500 (PARC_a3513) nadC 3420190..3421041 (+) 852 WP_010553350.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PARC_RS15505 (PARC_a3514) - 3421534..3421980 (+) 447 WP_010553351.1 pilin -
  PARC_RS15510 (PARC_a3515) pilC 3422046..3423269 (+) 1224 WP_010553352.1 type II secretion system F family protein Machinery gene
  PARC_RS15515 (PARC_a3516) pilD 3423333..3424226 (+) 894 WP_010553353.1 A24 family peptidase Machinery gene
  PARC_RS15520 (PARC_a3518) coaE 3424228..3424869 (+) 642 WP_010553354.1 dephospho-CoA kinase -
  PARC_RS15525 (PARC_a3519) pilB 3424996..3426672 (+) 1677 WP_010553355.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PARC_RS15530 (PARC_a3520) yacG 3426787..3427017 (+) 231 WP_007586146.1 DNA gyrase inhibitor YacG -
  PARC_RS15535 (PARC_a3521) - 3427089..3427577 (-) 489 WP_010553356.1 periplasmic heavy metal sensor -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44297.34 Da        Isoelectric Point: 9.9508

>NTDB_id=141555 PARC_RS15510 WP_010553352.1 3422046..3423269(+) (pilC) [Pseudoalteromonas arctica A 37-1-2]
MKNEKKSLDTFQWIGVSARGKRLEGELTGNSIALVKAQLRKQGITPSKVKRKAKPLFGIQNTQKITPKDIALVTRQIATM
LMAGVPLIQSIEMIGTGSTNKSVAKLMVTIADEVKAGQPLSTALRKHPRYFDDLYCDLVASGEQSGALDRIFDRVAIYKE
KSEALKSKIKKAMFYPVAVLVVAVIVTSILLIFVVPQFKEIFDGFGAELPAFTLFVIGISEFMQAYWWVALITVVTAGWI
FKEAKLRSLKLRDATDRTILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKVEVSS
GNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLPI
FQLGSVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=141555 PARC_RS15510 WP_010553352.1 3422046..3423269(+) (pilC) [Pseudoalteromonas arctica A 37-1-2]
ATGAAAAATGAAAAAAAAAGCTTAGATACTTTCCAATGGATTGGTGTTAGTGCAAGAGGAAAGCGTCTTGAAGGTGAGCT
TACAGGAAACAGTATTGCATTAGTAAAAGCTCAGCTTAGAAAACAAGGCATTACTCCTTCCAAAGTAAAGCGCAAAGCAA
AACCATTATTTGGTATTCAAAACACCCAAAAAATAACGCCAAAAGATATCGCATTAGTTACTCGCCAAATTGCGACCATG
CTAATGGCAGGGGTACCATTAATACAGTCTATAGAGATGATTGGCACTGGTTCGACTAACAAGAGCGTTGCCAAGTTAAT
GGTGACTATTGCTGATGAAGTAAAAGCAGGCCAGCCACTATCAACCGCACTTCGAAAACACCCTCGCTATTTTGATGATT
TATACTGTGACTTAGTCGCATCGGGCGAGCAATCAGGTGCGCTTGATAGAATATTTGATCGTGTCGCTATCTATAAAGAA
AAATCTGAAGCCTTAAAATCAAAAATTAAAAAGGCCATGTTTTACCCTGTAGCGGTATTAGTTGTTGCTGTTATTGTTAC
CTCCATATTATTAATATTTGTAGTACCTCAATTTAAAGAAATATTTGACGGTTTTGGCGCAGAGTTACCAGCTTTTACTT
TATTTGTAATTGGTATATCGGAATTTATGCAAGCATATTGGTGGGTTGCACTAATTACTGTAGTTACAGCTGGATGGATA
TTTAAAGAAGCAAAACTAAGAAGTTTAAAACTCAGAGATGCAACCGACAGAACCATTCTTAAACTCCCTGTAATTGGCAT
GATATTAAATAAAGCAGCTGTTGCTCGCTATGCACGAACTCTTTCGACCACCTTTGCGGCTGGTGTGCCATTAGTCGATG
CGCTTGATTCTGCTGCCGGAGCTTCAGGTAATGCTGTTTATCGCTATGCTATTTTAGATATCAAAGTAGAAGTGAGCTCT
GGTAATCAGATGAACTGGGCAATGCGTAACTCAAAAATATTTCCTGATATGGTAATACAAATGGTCGCTATTGGTGAGGA
GTCTGGCTCACTAGACGGTATGCTCGCAAAAGTAGCTACTATTTACGAGCAAGAAGTTGACGATGCAGTAGACGGCCTTT
CAAGTCTACTTGAGCCACTTATTATGGCCGTACTAGGTGTACTTGTTGGTGGCTTAATTATCGCGATGTATTTACCTATT
TTTCAACTTGGTTCTGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290SA32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.728

97.543

0.622
  pilC Legionella pneumophila strain ERS1305867

54.545

100

0.545
  pilC Acinetobacter baylyi ADP1

55.25

98.28

0.543
  pilC Acinetobacter baumannii D1279779

55

98.28

0.541
  pilC Vibrio cholerae strain A1552

44.279

98.771

0.437
  pilG Neisseria meningitidis 44/76-A

44.501

96.069

0.428
  pilG Neisseria gonorrhoeae MS11

44.246

96.069

0.425
  pilC Vibrio campbellii strain DS40M4

41.951

100

0.423
  pilC Thermus thermophilus HB27

36.908

98.526

0.364

Multiple sequence alignment