Detailed information NTG0141556

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PARC_RS15515
• Genome accession: NZ_CP011025
• Coordinates: 3423333..3424226 (+)
• Length: 297 a.a.
• NCBI ID: WP_010553353.1
• Uniprot ID: A0A290S723
• Organism: Pseudoalteromonas arctica A 37-1-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3418333..3429226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PARC_RS15490 (PARC_a3511)	ampE	3418534..3419385 (-)	852	WP_010553348.1	beta-lactamase regulator AmpE	-
PARC_RS15495 (PARC_a3512)	ampD	3419398..3419952 (-)	555	WP_010553349.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PARC_RS15500 (PARC_a3513)	nadC	3420190..3421041 (+)	852	WP_010553350.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PARC_RS15505 (PARC_a3514)	-	3421534..3421980 (+)	447	WP_010553351.1	pilin	-
PARC_RS15510 (PARC_a3515)	pilC	3422046..3423269 (+)	1224	WP_010553352.1	type II secretion system F family protein	Machinery gene
PARC_RS15515 (PARC_a3516)	pilD	3423333..3424226 (+)	894	WP_010553353.1	A24 family peptidase	Machinery gene
PARC_RS15520 (PARC_a3518)	coaE	3424228..3424869 (+)	642	WP_010553354.1	dephospho-CoA kinase	-
PARC_RS15525 (PARC_a3519)	pilB	3424996..3426672 (+)	1677	WP_010553355.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PARC_RS15530 (PARC_a3520)	yacG	3426787..3427017 (+)	231	WP_007586146.1	DNA gyrase inhibitor YacG	-
PARC_RS15535 (PARC_a3521)	-	3427089..3427577 (-)	489	WP_010553356.1	periplasmic heavy metal sensor	-
PARC_RS15540 (PARC_a3522)	-	3427755..3428444 (+)	690	WP_007586150.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32922.32 Da
• Isoelectric Point: 8.1237

>NTDB_id=141556 PARC_RS15515 WP_010553353.1 3423333..3424226(+) (pilD) [Pseudoalteromonas arctica A 37-1-2]
MQSIIEVMQSQLWFYLTTVGLVSLCIGSFLNVVIYRLPLMMQREWQSECRLLLEDELTANKSKQANINKPFNLVKPNSTC
PKCKTAIKPWQNIPIISWLILKGKCASCSNPISVRYPAVELITALLSLIVAYSFGTTEQALLYIFVTWILVALTFIDIDH
MLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTI
ILLSSIVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGNQIQGAYFNLIGY

Nucleotide

• Length: 894 bp

>NTDB_id=141556 PARC_RS15515 WP_010553353.1 3423333..3424226(+) (pilD) [Pseudoalteromonas arctica A 37-1-2]
ATGCAAAGTATTATAGAAGTAATGCAAAGCCAATTGTGGTTTTATTTAACAACAGTTGGCTTAGTCAGTTTATGTATTGG
TAGTTTTTTAAATGTGGTTATTTATCGCTTACCGTTGATGATGCAACGTGAGTGGCAAAGTGAATGTAGACTGTTGTTAG
AAGATGAACTTACAGCTAATAAATCTAAACAAGCCAATATCAATAAGCCTTTTAACTTAGTAAAACCCAACTCTACCTGC
CCTAAATGCAAAACAGCCATTAAGCCTTGGCAGAATATTCCTATTATTAGTTGGTTAATACTTAAAGGTAAATGCGCAAG
CTGCAGTAATCCTATTTCGGTCCGATACCCTGCTGTAGAGCTAATTACTGCCCTATTAAGTTTAATTGTTGCCTACAGCT
TTGGTACGACCGAGCAAGCCCTTTTATATATTTTTGTAACGTGGATTTTAGTAGCACTAACCTTTATTGATATTGACCAC
ATGCTACTGCCGGATCAGCTTACACTTCCGCTTGTTTGGCTTGCACTTATTGCTTCTGTAATGGGTTACACAATTACACC
AACCGATGCAATTATTGGCGCGGCTTGTGGTTATTTAAGTCTATGGAGCGTGTTTTGGCTATTTAAGTTATTAACCGGTA
AAGAAGGCATGGGTTATGGCGACTTTAAACTACTCGCTGTATTTGGGGCATTACTTGGCTGGCAGTCATTACTTACTATT
ATTCTGCTTTCGAGCATAGTAGGTGCCATTATAGGTATTGCGCTGTTGAGCATACAAGGTAAAGACAAAGCGACCCCTAT
CCCTTTTGGCCCTTATTTAGCGATAGCAGGCTGGATCACTATGCTTTGGGGCAACCAAATTCAAGGCGCTTATTTTAATT
TAATAGGTTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-134)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

3D structure

• AlphaFold DB: A0A290S723

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.877	98.653	0.512
pilD	Acinetobacter nosocomialis M2	51.877	98.653	0.512
pilD	Vibrio campbellii strain DS40M4	50.847	99.327	0.505
pilD	Vibrio cholerae strain A1552	50.512	98.653	0.498
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411