Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RY45_RS20055 Genome accession   NZ_CP010947
Coordinates   4411828..4413069 (+) Length   413 a.a.
NCBI ID   WP_017409439.1    Uniprot ID   A0AAX0XY15
Organism   Aeromonas hydrophila strain AL06-06 isolate Goldfish     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4406828..4418069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY45_RS23345 ampD 4407198..4407770 (-) 573 WP_080891465.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RY45_RS20035 (RY45_20020) - 4407918..4408388 (+) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  RY45_RS20040 (RY45_20025) nadC 4408394..4409251 (+) 858 WP_044800921.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RY45_RS23355 (RY45_20030) tapA 4409574..4410002 (+) 429 WP_044800922.1 type IVa pilus major pilin TapA -
  RY45_RS20050 (RY45_20035) pilB 4410006..4411712 (+) 1707 WP_044800923.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  RY45_RS20055 (RY45_20040) pilC 4411828..4413069 (+) 1242 WP_017409439.1 type II secretion system F family protein Machinery gene
  RY45_RS20060 (RY45_20045) pilD 4413092..4413964 (+) 873 WP_044800924.1 A24 family peptidase Machinery gene
  RY45_RS20065 (RY45_20050) coaE 4413984..4414598 (+) 615 WP_044800925.1 dephospho-CoA kinase -
  RY45_RS20070 (RY45_20055) zapD 4414636..4415358 (+) 723 WP_024945431.1 cell division protein ZapD -
  RY45_RS20075 (RY45_20060) yacG 4415368..4415562 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  RY45_RS20080 (RY45_20065) mutT 4415623..4416036 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  RY45_RS20085 (RY45_20070) - 4416045..4417229 (-) 1185 WP_044800926.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45408.55 Da        Isoelectric Point: 9.8637

>NTDB_id=140836 RY45_RS20055 WP_017409439.1 4411828..4413069(+) (pilC) [Aeromonas hydrophila strain AL06-06 isolate Goldfish]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=140836 RY45_RS20055 WP_017409439.1 4411828..4413069(+) (pilC) [Aeromonas hydrophila strain AL06-06 isolate Goldfish]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTTAATCGCAAGGGCCA
AAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAAGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAAGCGCTACGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTTATCCTGGT
GGCCATTGTTGTTACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACCCTCTCCACCACCTTCTCTGCCGGTA
TCCCGCTGGTGGATGCCTTGGTCTCTGCAGCCGGCGCCTCTGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGTACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
AATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment