Detailed information NTG0140837

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RY45_RS20060
• Genome accession: NZ_CP010947
• Coordinates: 4413092..4413964 (+)
• Length: 290 a.a.
• NCBI ID: WP_044800924.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain AL06-06 isolate Goldfish
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4408092..4418964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RY45_RS20040 (RY45_20025)	nadC	4408394..4409251 (+)	858	WP_044800921.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RY45_RS23355 (RY45_20030)	tapA	4409574..4410002 (+)	429	WP_044800922.1	type IVa pilus major pilin TapA	-
RY45_RS20050 (RY45_20035)	pilB	4410006..4411712 (+)	1707	WP_044800923.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
RY45_RS20055 (RY45_20040)	pilC	4411828..4413069 (+)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
RY45_RS20060 (RY45_20045)	pilD	4413092..4413964 (+)	873	WP_044800924.1	A24 family peptidase	Machinery gene
RY45_RS20065 (RY45_20050)	coaE	4413984..4414598 (+)	615	WP_044800925.1	dephospho-CoA kinase	-
RY45_RS20070 (RY45_20055)	zapD	4414636..4415358 (+)	723	WP_024945431.1	cell division protein ZapD	-
RY45_RS20075 (RY45_20060)	yacG	4415368..4415562 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
RY45_RS20080 (RY45_20065)	mutT	4415623..4416036 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
RY45_RS20085 (RY45_20070)	-	4416045..4417229 (-)	1185	WP_044800926.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32496.78 Da
• Isoelectric Point: 6.7409

>NTDB_id=140837 RY45_RS20060 WP_044800924.1 4413092..4413964(+) (pilD) [Aeromonas hydrophila strain AL06-06 isolate Goldfish]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=140837 RY45_RS20060 WP_044800924.1 4413092..4413964(+) (pilD) [Aeromonas hydrophila strain AL06-06 isolate Goldfish]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTACCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGCTCTGCTTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCCCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGGCT
TGCTGGCTGCCTTGTTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTTCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAACCTGGCAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCTTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462