Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SB48_RS13200 Genome accession   NZ_CP010525
Coordinates   2670064..2671014 (-) Length   316 a.a.
NCBI ID   WP_035182202.1    Uniprot ID   A0AAN0T8M8
Organism   Heyndrickxia coagulans strain HM-08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665064..2676014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS13170 (SB48_HM08orf05035) - 2665732..2666424 (-) 693 WP_013858648.1 response regulator transcription factor -
  SB48_RS13175 (SB48_HM08orf05038) - 2666458..2666817 (-) 360 WP_225620971.1 DUF5316 family protein -
  SB48_RS13180 (SB48_HM08orf05041) - 2667123..2667359 (+) 237 WP_026104642.1 4Fe-4S binding protein -
  SB48_RS13185 (SB48_HM08orf05042) - 2667416..2668354 (-) 939 WP_035182195.1 siderophore ABC transporter substrate-binding protein -
  SB48_RS13190 (SB48_HM08orf05043) - 2668369..2669127 (-) 759 WP_014095858.1 ABC transporter ATP-binding protein -
  SB48_RS13195 (SB48_HM08orf05044) - 2669121..2670071 (-) 951 WP_035182199.1 iron chelate uptake ABC transporter family permease subunit -
  SB48_RS13200 (SB48_HM08orf05045) ceuB 2670064..2671014 (-) 951 WP_035182202.1 ABC transporter permease Machinery gene
  SB48_RS13205 (SB48_HM08orf05050) - 2671327..2672523 (-) 1197 WP_225621021.1 PDZ domain-containing protein -
  SB48_RS13210 (SB48_HM08orf05051) - 2673236..2674252 (+) 1017 Protein_2517 IS256 family transposase -
  SB48_RS13215 - 2674967..2675215 (-) 249 WP_074964141.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34408.52 Da        Isoelectric Point: 10.0424

>NTDB_id=139047 SB48_RS13200 WP_035182202.1 2670064..2671014(-) (ceuB) [Heyndrickxia coagulans strain HM-08]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=139047 SB48_RS13200 WP_035182202.1 2670064..2671014(-) (ceuB) [Heyndrickxia coagulans strain HM-08]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTAGTTGCGATCATTCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCACTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment