Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SB48_RS13460 Genome accession   NZ_CP010525
Coordinates   2723800..2725185 (-) Length   461 a.a.
NCBI ID   WP_014095892.1    Uniprot ID   A0AAN0T8D5
Organism   Heyndrickxia coagulans strain HM-08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2718800..2730185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS13430 (SB48_HM08orf05125) flgL 2719271..2720164 (-) 894 WP_013858614.1 flagellar hook-associated protein FlgL -
  SB48_RS13435 (SB48_HM08orf05127) flgK 2720179..2721795 (-) 1617 WP_017551636.1 flagellar hook-associated protein FlgK -
  SB48_RS13440 (SB48_HM08orf05129) - 2721818..2722288 (-) 471 WP_035182249.1 flagellar protein FlgN -
  SB48_RS13445 (SB48_HM08orf05131) flgM 2722301..2722567 (-) 267 WP_014095890.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB48_RS13450 (SB48_HM08orf05133) - 2722638..2723033 (-) 396 WP_013858610.1 TIGR03826 family flagellar region protein -
  SB48_RS13455 (SB48_HM08orf05134) - 2723100..2723807 (-) 708 WP_014095891.1 ComF family protein -
  SB48_RS13460 (SB48_HM08orf05138) comFA 2723800..2725185 (-) 1386 WP_014095892.1 DEAD/DEAH box helicase Machinery gene
  SB48_RS13465 (SB48_HM08orf05141) - 2725487..2726329 (-) 843 WP_014095894.1 DegV family protein -
  SB48_RS13470 (SB48_HM08orf05143) - 2726892..2728316 (+) 1425 WP_035182251.1 amino acid permease -
  SB48_RS13480 (SB48_HM08orf05148) - 2728654..2729337 (-) 684 WP_026684742.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51504.82 Da        Isoelectric Point: 9.0549

>NTDB_id=139048 SB48_RS13460 WP_014095892.1 2723800..2725185(-) (comFA) [Heyndrickxia coagulans strain HM-08]
MPSVFSEQLQRHLAGRILFEPEIPFSPELLDQHFKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLITWAGPAPAFHSPRHPLHWDGTLSEGQQAASEAVKAAILQKNELLIWAVCGSGKTEIVFKGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDVVIVDEVDAFPYTFD
ETLQCAVQKAAKDRCARIYLTATPSETWQLECKTGKRPFVTIPARYHRKPLPVPVFKWAGNWRKKFEKGKLPVPVEAWVK
KRLESGKQALLFLPNIRLMKKAEPVFKQLHPAIESVHAEDPDRKEKVERMRAGKTPLLLTTTILERGVTFPNIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPSGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=139048 SB48_RS13460 WP_014095892.1 2723800..2725185(-) (comFA) [Heyndrickxia coagulans strain HM-08]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCCGGACGGATCCTGTTCGAACCGGAAATCCCTTTTTCACC
GGAACTGCTTGATCAGCACTTTAAACAAGGCTGGATCCGCGCTGAGCCGGCGATACAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATTTATTGC
CGGAACTGCCTGATGATGGGGCGGGTCACCGCATGCAAGCCGCTTATCACATGGGCAGGCCCTGCGCCCGCATTCCACTC
GCCCAGGCACCCGCTCCATTGGGATGGCACCCTTTCTGAAGGGCAGCAGGCTGCATCCGAAGCGGTTAAAGCAGCCATTC
TTCAAAAAAACGAGCTCTTGATTTGGGCTGTTTGCGGATCAGGGAAGACAGAGATCGTTTTCAAAGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCAACCCCCAGAACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTCATCTCCACTA
CCCACCAGCTGTACCGCTTTGCATCCGCCTTTGATGTCGTGATTGTAGATGAAGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGTGCGCCGTTCAAAAAGCGGCAAAAGACCGCTGCGCCCGCATTTATCTTACCGCAACACCAAGTGAAAC
ATGGCAGCTTGAATGCAAGACAGGTAAGCGCCCGTTTGTCACGATCCCGGCCCGCTATCACCGCAAGCCCCTCCCTGTTC
CTGTATTCAAATGGGCAGGCAACTGGCGAAAAAAGTTTGAGAAAGGCAAGCTCCCGGTTCCGGTTGAAGCATGGGTAAAA
AAGAGGCTTGAATCCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAGCCGGTTTTTAA
ACAGCTGCATCCAGCGATTGAATCGGTGCACGCAGAAGACCCGGATCGGAAAGAAAAAGTGGAAAGGATGCGCGCCGGCA
AAACGCCGCTTTTGCTAACAACGACCATTCTTGAACGCGGCGTCACGTTTCCGAATATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCTATCTTTACGGAAGCTGCCCTCGTCCAGATCGCGGGCCGAGCCGGAAGAAGCGCCGATTTCCCAAGTGGGGA
CGTGACGTTTTTCCATTACGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-265)

Helicase conserved C-terminal domain (Helicase_C)

(322-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.11

98.265

0.492
  comFA Latilactobacillus sakei subsp. sakei 23K

38.747

93.492

0.362

Multiple sequence alignment