Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SB48_RS01065 Genome accession   NZ_CP010525
Coordinates   219691..220050 (-) Length   119 a.a.
NCBI ID   WP_014096779.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HM-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214691..225050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS01040 (SB48_HM08orf00364) spoIIID 215440..215706 (+) 267 WP_014096774.1 sporulation transcriptional regulator SpoIIID -
  SB48_RS01045 (SB48_HM08orf00366) - 216096..217097 (+) 1002 WP_014096775.1 rod shape-determining protein -
  SB48_RS01050 (SB48_HM08orf00369) - 217136..217924 (+) 789 WP_035183247.1 flagellar hook-basal body protein -
  SB48_RS01055 (SB48_HM08orf00370) - 217952..218782 (+) 831 WP_014096777.1 flagellar hook-basal body protein -
  SB48_RS01060 (SB48_HM08orf00373) fabZ 218910..219335 (+) 426 WP_014096778.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SB48_RS18690 (SB48_HM08orf00376) - 219520..219684 (-) 165 WP_013860712.1 hypothetical protein -
  SB48_RS01065 (SB48_HM08orf00378) ssbB 219691..220050 (-) 360 WP_014096779.1 single-stranded DNA-binding protein Machinery gene
  SB48_RS01070 (SB48_HM08orf00379) - 220357..220779 (+) 423 WP_014096780.1 YwpF-like family protein -
  SB48_RS01075 (SB48_HM08orf00380) - 220811..221245 (-) 435 WP_014096781.1 DUF4944 domain-containing protein -
  SB48_RS01080 (SB48_HM08orf00381) - 221333..224134 (-) 2802 WP_017550307.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13455.36 Da        Isoelectric Point: 9.9022

>NTDB_id=139011 SB48_RS01065 WP_014096779.1 219691..220050(-) (ssbB) [Heyndrickxia coagulans strain HM-08]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=139011 SB48_RS01065 WP_014096779.1 219691..220050(-) (ssbB) [Heyndrickxia coagulans strain HM-08]
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACAGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.818

92.437

0.571
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

89.076

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.379

97.479

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

90.756

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae D39

41.667

90.756

0.378
  ssbB/cilA Streptococcus pneumoniae R6

41.667

90.756

0.378
  ssbB/cilA Streptococcus mitis SK321

41.667

90.756

0.378
  ssbA Streptococcus mutans UA159

40.741

90.756

0.37

Multiple sequence alignment