Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SD89_RS00725 Genome accession   NZ_CP010449
Coordinates   112140..112535 (+) Length   131 a.a.
NCBI ID   WP_046177419.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107140..117535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS00695 (SD89_00695) - 108006..108314 (+) 309 Protein_91 hypothetical protein -
  SD89_RS00700 (SD89_00700) proC 108397..109167 (-) 771 WP_011284426.1 pyrroline-5-carboxylate reductase -
  SD89_RS00705 (SD89_00705) pepA 109215..110282 (-) 1068 WP_011284427.1 glutamyl aminopeptidase -
  SD89_RS00710 (SD89_00710) - 110747..111028 (+) 282 WP_024623420.1 DUF4651 domain-containing protein -
  SD89_RS00715 (SD89_00715) - 111028..111345 (+) 318 WP_053308151.1 thioredoxin family protein -
  SD89_RS00720 (SD89_00720) ytpR 111363..111989 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  SD89_RS00725 (SD89_00725) ssbA 112140..112535 (+) 396 WP_046177419.1 single-stranded DNA-binding protein Machinery gene
  SD89_RS00730 (SD89_00730) - 112795..113436 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  SD89_RS00735 (SD89_00735) dusB 113456..114433 (-) 978 WP_053308152.1 tRNA dihydrouridine synthase DusB -
  SD89_RS00740 (SD89_00740) hslO 114420..115292 (-) 873 WP_023610084.1 Hsp33 family molecular chaperone HslO -
  SD89_RS00745 (SD89_00745) rofA 115439..116932 (-) 1494 WP_053308153.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14786.97 Da        Isoelectric Point: 8.8846

>NTDB_id=137316 SD89_RS00725 WP_046177419.1 112140..112535(+) (ssbA) [Streptococcus pyogenes strain NGAS322]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYNKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=137316 SD89_RS00725 WP_046177419.1 112140..112535(+) (ssbA) [Streptococcus pyogenes strain NGAS322]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACTCGC
AAGTATAATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment