Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RU84_RS01505 | Genome accession | NZ_CP010397 |
| Coordinates | 327694..328131 (+) | Length | 145 a.a. |
| NCBI ID | WP_000993715.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 6200 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 322694..333131
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RU84_RS01485 (RU84_01485) | - | 324084..324971 (+) | 888 | WP_001017320.1 | metal-dependent hydrolase | - |
| RU84_RS01490 (RU84_01490) | - | 325102..325692 (+) | 591 | WP_000846931.1 | LemA family protein | - |
| RU84_RS01495 (RU84_01495) | - | 325714..326796 (+) | 1083 | WP_032050294.1 | YgcG family protein | - |
| RU84_RS01500 (RU84_01500) | - | 326790..327350 (+) | 561 | WP_004839782.1 | TPM domain-containing protein | - |
| RU84_RS01505 (RU84_01505) | pilA | 327694..328131 (+) | 438 | WP_000993715.1 | pilin | Machinery gene |
| RU84_RS01510 (RU84_01510) | - | 328189..329499 (+) | 1311 | WP_029424119.1 | O-antigen ligase family protein | - |
| RU84_RS01515 (RU84_01515) | - | 329606..331234 (+) | 1629 | WP_001195765.1 | PglL family O-oligosaccharyltransferase | - |
| RU84_RS01520 (RU84_01520) | bfr | 331275..331739 (-) | 465 | WP_000678123.1 | bacterioferritin | - |
| RU84_RS01525 (RU84_01525) | - | 331984..332178 (-) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| RU84_RS01530 (RU84_01530) | - | 332388..332771 (-) | 384 | WP_000090000.1 | RidA family protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15022.14 Da Isoelectric Point: 8.1097
>NTDB_id=136760 RU84_RS01505 WP_000993715.1 327694..328131(+) (pilA) [Acinetobacter baumannii strain 6200]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
Nucleotide
Download Length: 438 bp
>NTDB_id=136760 RU84_RS01505 WP_000993715.1 327694..328131(+) (pilA) [Acinetobacter baumannii strain 6200]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
52.414 |
100 |
0.524 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae strain A1552 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae C6706 |
44.218 |
100 |
0.448 |
| pilA | Pseudomonas aeruginosa PAK |
41.558 |
100 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.357 |
98.621 |
0.428 |
| comP | Acinetobacter baylyi ADP1 |
40 |
100 |
0.414 |
| pilA | Haemophilus influenzae 86-028NP |
38.816 |
100 |
0.407 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.845 |
97.931 |
0.4 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.651 |
86.897 |
0.379 |