Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GBS85147_RS01085 | Genome accession | NZ_CP010319 |
| Coordinates | 194250..194645 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain GBS85147 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 189250..199645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBS85147_RS01050 (GBS85147_0211) | proC | 189644..190414 (-) | 771 | WP_001867096.1 | pyrroline-5-carboxylate reductase | - |
| GBS85147_RS01055 (GBS85147_0212) | pepA | 190484..191551 (-) | 1068 | WP_053039116.1 | glutamyl aminopeptidase | - |
| GBS85147_RS01060 (GBS85147_0213) | - | 191736..191975 (-) | 240 | WP_000660178.1 | hypothetical protein | - |
| GBS85147_RS01065 (GBS85147_0214) | - | 192136..192420 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| GBS85147_RS01070 (GBS85147_0215) | - | 192417..192740 (+) | 324 | WP_000602780.1 | thioredoxin family protein | - |
| GBS85147_RS01075 (GBS85147_0216) | ytpR | 192773..193399 (+) | 627 | WP_000578324.1 | YtpR family tRNA-binding protein | - |
| GBS85147_RS01080 (GBS85147_0217) | - | 193453..194169 (-) | 717 | WP_000186181.1 | class I SAM-dependent methyltransferase | - |
| GBS85147_RS01085 (GBS85147_0218) | ssbA | 194250..194645 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| GBS85147_RS01090 (GBS85147_0219) | - | 194770..195414 (+) | 645 | WP_000416615.1 | HAD family phosphatase | - |
| GBS85147_RS01095 (GBS85147_0220) | - | 195441..197186 (+) | 1746 | WP_000930336.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| GBS85147_RS01100 (GBS85147_0221) | - | 197167..197907 (+) | 741 | WP_000697630.1 | LytTR family DNA-binding domain-containing protein | - |
| GBS85147_RS01105 (GBS85147_0222) | - | 198078..198533 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| GBS85147_RS01110 (GBS85147_0223) | lrgB | 198535..199263 (+) | 729 | WP_000421727.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=136354 GBS85147_RS01085 WP_000282447.1 194250..194645(+) (ssbA) [Streptococcus agalactiae strain GBS85147]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=136354 GBS85147_RS01085 WP_000282447.1 194250..194645(+) (ssbA) [Streptococcus agalactiae strain GBS85147]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |