Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AN158_RS07080 Genome accession   NZ_CP012587
Coordinates   1538738..1539247 (-) Length   169 a.a.
NCBI ID   WP_032046350.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533738..1544247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS07055 (AN158_07050) - 1534708..1535091 (+) 384 WP_000090000.1 RidA family protein -
  AN158_RS07060 (AN158_07055) - 1535301..1535495 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  AN158_RS07065 (AN158_07060) bfr 1535740..1536204 (+) 465 WP_000678123.1 heteropolymeric bacterioferritin subunit Bfr -
  AN158_RS07070 (AN158_07065) - 1536245..1537873 (-) 1629 WP_069370503.1 PglL family O-oligosaccharyltransferase -
  AN158_RS07075 (AN158_07070) tfpZ 1537972..1538682 (-) 711 WP_069370504.1 TfpX/TfpZ family type IV pilin accessory protein -
  AN158_RS07080 (AN158_07075) pilE 1538738..1539247 (-) 510 WP_032046350.1 pilin Machinery gene
  AN158_RS07085 (AN158_07080) - 1539587..1540147 (-) 561 WP_016653486.1 TPM domain-containing protein -
  AN158_RS07090 (AN158_07085) - 1540141..1541223 (-) 1083 WP_069370505.1 TPM domain-containing protein -
  AN158_RS07095 (AN158_07090) - 1541245..1541835 (-) 591 WP_000846931.1 LemA family protein -
  AN158_RS07100 (AN158_07095) - 1541966..1542853 (-) 888 WP_069370506.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17415.79 Da        Isoelectric Point: 5.0467

>NTDB_id=134708 AN158_RS07080 WP_032046350.1 1538738..1539247(-) (pilE) [Acinetobacter baumannii strain CA-17]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTVRSQVTEGLNMAGGVKTAVNDYYTDVGSWPVDIQAAVCGKNATTAC
DGGTSTDYKGNYVSEIAVASGAVNITYGNKANSNALDKKILTLIPGVDTAKNVTWVCGNAATPTGVTLAAGTKNATDIDA
KYLPGSCKN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=134708 AN158_RS07080 WP_032046350.1 1538738..1539247(-) (pilE) [Acinetobacter baumannii strain CA-17]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCTGCGTACCAGGATTATACAGTTCGTTCACAAGTGACTGAAGGCCTTAATATGGCTGGTGGTGTTAAAACTGCAGTAA
ATGACTATTATACAGATGTTGGTTCATGGCCAGTTGATATTCAGGCAGCAGTCTGTGGTAAAAATGCTACTACAGCATGT
GATGGGGGTACAAGTACTGATTATAAAGGTAACTATGTGTCTGAGATTGCTGTAGCATCTGGTGCTGTAAATATAACTTA
TGGTAACAAAGCGAATAGTAATGCATTAGATAAGAAAATCTTAACACTTATTCCTGGTGTAGATACGGCTAAAAACGTAA
CTTGGGTCTGCGGTAATGCTGCAACACCTACTGGTGTTACTTTAGCGGCAGGTACTAAAAATGCTACAGATATTGATGCA
AAATATCTTCCTGGTTCTTGTAAAAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

44.578

98.225

0.438
  pilE Neisseria gonorrhoeae MS11

43.976

98.225

0.432
  comP Acinetobacter baylyi ADP1

41.379

100

0.426
  pilA2 Legionella pneumophila str. Paris

43.373

98.225

0.426
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.979

100

0.42
  pilE Neisseria gonorrhoeae strain FA1090

41.667

99.408

0.414
  pilA/pilA1 Eikenella corrodens VA1

39.766

100

0.402
  pilA Ralstonia pseudosolanacearum GMI1000

36.464

100

0.391
  pilA Acinetobacter baumannii strain A118

38.596

100

0.391
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.207

100

0.373