Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LT85_RS22125 Genome accession   NZ_CP009962
Coordinates   5016077..5017309 (+) Length   410 a.a.
NCBI ID   WP_038493258.1    Uniprot ID   A0A0A1FJ02
Organism   Collimonas arenae strain Cal35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5011077..5022309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS22105 (LT85_4468) ispB 5011765..5012715 (+) 951 WP_156117685.1 octaprenyl diphosphate synthase -
  LT85_RS22115 (LT85_4469) - 5012928..5014217 (+) 1290 WP_038493254.1 HlyC/CorC family transporter -
  LT85_RS22120 (LT85_4470) pilB 5014340..5016061 (+) 1722 WP_038493256.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LT85_RS22125 (LT85_4471) pilC 5016077..5017309 (+) 1233 WP_038493258.1 type II secretion system F family protein Machinery gene
  LT85_RS22130 (LT85_4472) pilD 5017309..5018175 (+) 867 WP_038493260.1 A24 family peptidase Machinery gene
  LT85_RS22135 (LT85_4473) coaE 5018182..5018832 (+) 651 WP_038493262.1 dephospho-CoA kinase -
  LT85_RS22140 (LT85_4474) zapD 5018963..5019718 (+) 756 WP_038493264.1 cell division protein ZapD -
  LT85_RS22145 (LT85_4475) - 5019741..5019929 (+) 189 WP_038493266.1 DNA gyrase inhibitor YacG -
  LT85_RS22150 (LT85_4476) - 5020004..5020417 (-) 414 WP_038493267.1 NUDIX domain-containing protein -
  LT85_RS22155 (LT85_4477) - 5020438..5021316 (-) 879 WP_038493270.1 ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44753.84 Da        Isoelectric Point: 10.2283

>NTDB_id=133202 LT85_RS22125 WP_038493258.1 5016077..5017309(+) (pilC) [Collimonas arenae strain Cal35]
MATAARSAASARQVKEWVFVWEGKDKKGKIVRGELRAGSETVVNVTMRRQGILVTKVKKKTFRSGKKISDKDISLFTRQL
ATMMKAGVPLLQSFDIVAKGHANPSVSKLVNDIRGDVETGTSLSQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLERLAI
YKEKTLAIKGKIKSALFYPISILAVAFVVTAVIMIWVVPAFKQVFASFGANLPAPTLFVMAISDFMVGNWYIIFPTIFAG
LYLFFQSWRRSLKMQRVMDKLLLKAPIFGEVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQSE
VSTGTSLTTAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVIAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=133202 LT85_RS22125 WP_038493258.1 5016077..5017309(+) (pilC) [Collimonas arenae strain Cal35]
ATGGCAACTGCCGCACGCAGCGCTGCAAGCGCACGTCAGGTAAAAGAGTGGGTTTTTGTCTGGGAGGGCAAAGACAAAAA
GGGCAAAATAGTCCGCGGAGAACTGCGTGCCGGTAGCGAGACTGTGGTCAACGTCACCATGCGTCGGCAAGGTATCCTGG
TTACCAAAGTTAAAAAGAAGACCTTTCGTAGCGGGAAAAAAATTTCCGACAAGGATATTTCCCTGTTTACCCGTCAGCTG
GCTACCATGATGAAGGCGGGCGTACCGCTTTTGCAATCTTTCGATATTGTAGCCAAAGGCCACGCGAATCCGTCGGTATC
AAAACTCGTCAATGACATCCGTGGCGATGTGGAGACAGGAACCAGCCTGAGCCAGGCATTTCGCAAGTTTCCCTTGTACT
TCGATCCACTCTTCTGCAATCTGGTTGGAGCAGGCGAGCAAGCCGGTATTCTTGAGGACTTGCTGGAACGCTTGGCGATC
TACAAAGAAAAAACCCTCGCCATCAAAGGTAAGATCAAGTCTGCACTGTTCTACCCCATATCAATCCTGGCGGTGGCGTT
TGTCGTTACCGCAGTGATCATGATTTGGGTGGTACCTGCGTTCAAACAGGTATTTGCAAGTTTCGGCGCCAACTTGCCCG
CACCTACCTTGTTCGTAATGGCGATCTCCGATTTCATGGTGGGCAACTGGTACATCATTTTCCCTACCATATTTGCCGGC
TTATATCTGTTCTTCCAATCTTGGAGGCGTTCGCTCAAAATGCAACGCGTCATGGATAAGCTCTTGTTAAAAGCTCCAAT
CTTCGGTGAGGTGATACGCAAAGCTACGATTGCACGGTGGACGCGCACTCTAGCCACCATGTTTGCAGCCGGTGTGCCGT
TGGTCGAGTCGCTTGACTCTGTAGGCGGCGCATCAGGCAATGCCGTGTATCTTGATGCCACCAAGAAGATTCAGAGCGAA
GTCAGCACGGGCACAAGCCTGACCACGGCAATGGAAAATGCCAACGTGTTTCCGAATATGGTGACACAGATGGTCTCTAT
TGGTGAAGAGTCAGGCTCCCTGGACCAGATGCTGGGTAAGGTTGCCGATTTCTATGAAGCAGAAGTCGACGATGCCGTGG
CATCCCTGTCCAGCCTGATGGAACCTCTGATCATGGTAATCCTGGGTGTGTTGATCGGCGGCTTGGTAATCGCCATGTAT
CTGCCAATTTTCAAACTGGGTTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1FJ02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.731

98.049

0.527
  pilC Acinetobacter baumannii D1279779

53.401

96.829

0.517
  pilG Neisseria gonorrhoeae MS11

53.266

97.073

0.517
  pilG Neisseria meningitidis 44/76-A

53.015

97.073

0.515
  pilC Legionella pneumophila strain ERS1305867

52.525

96.585

0.507
  pilC Acinetobacter baylyi ADP1

52.01

97.073

0.505
  pilC Vibrio campbellii strain DS40M4

40

98.78

0.395
  pilC Vibrio cholerae strain A1552

40.302

96.829

0.39
  pilC Thermus thermophilus HB27

36.145

100

0.366

Multiple sequence alignment