Detailed information NTG0133201

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AKO63_RS14810
• Genome accession: NZ_CP012379
• Coordinates: 2876441..2877433 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PAR
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2871441..2882433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AKO63_RS14790 (AKO63_2854)	ygbM	2872075..2872851 (+)	777	WP_042073389.1	HPr family phosphocarrier protein	-
AKO63_RS14795 (AKO63_2855)	ygbN	2872940..2874304 (+)	1365	WP_000104433.1	GntP family transporter	-
AKO63_RS14800 (AKO63_2856)	-	2874447..2875490 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
AKO63_RS14805 (AKO63_2858)	-	2875715..2876266 (+)	552	WP_001179442.1	flavodoxin family protein	-
AKO63_RS14810 (AKO63_2859)	rpoS	2876441..2877433 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AKO63_RS14815 (AKO63_2860)	nlpD	2877496..2878590 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AKO63_RS14820 (AKO63_2861)	pcm	2878775..2879401 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AKO63_RS14825 (AKO63_2862)	surE	2879395..2880156 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AKO63_RS14830 (AKO63_2863)	truD	2880137..2881186 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
AKO63_RS14835 (AKO63_2864)	ispF	2881183..2881662 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AKO63_RS14840 (AKO63_2865)	ispD	2881662..2882372 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=133201 AKO63_RS14810 WP_000081550.1 2876441..2877433(-) (rpoS) [Escherichia coli strain PAR]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=133201 AKO63_RS14810 WP_000081550.1 2876441..2877433(-) (rpoS) [Escherichia coli strain PAR]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715