Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BF29_RS09920 Genome accession   NZ_CP009709
Coordinates   1968002..1968361 (+) Length   119 a.a.
NCBI ID   WP_013860711.1    Uniprot ID   A0A8B4BV61
Organism   Heyndrickxia coagulans DSM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1963002..1973361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF29_RS09905 (BF29_2023) - 1963881..1966682 (+) 2802 WP_029142409.1 DEAD/DEAH box helicase -
  BF29_RS09910 (BF29_2024) - 1966772..1967206 (+) 435 WP_013860709.1 DUF4944 domain-containing protein -
  BF29_RS09915 (BF29_2025) - 1967230..1967652 (-) 423 WP_013860710.1 YwpF-like family protein -
  BF29_RS09920 (BF29_2026) ssbB 1968002..1968361 (+) 360 WP_013860711.1 single-stranded DNA-binding protein Machinery gene
  BF29_RS17890 (BF29_2027) - 1968368..1968532 (+) 165 WP_013860712.1 hypothetical protein -
  BF29_RS09925 (BF29_2028) fabZ 1968719..1969144 (-) 426 WP_019721004.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BF29_RS09930 (BF29_2029) - 1969275..1970105 (-) 831 WP_029142410.1 flagellar hook-basal body protein -
  BF29_RS09935 (BF29_2030) - 1970133..1970921 (-) 789 WP_029142411.1 flagellar hook-basal body protein -
  BF29_RS09940 (BF29_2031) - 1970960..1971961 (-) 1002 WP_019721007.1 rod shape-determining protein -
  BF29_RS09950 (BF29_2032) spoIIID 1972355..1972621 (-) 267 WP_017553086.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13456.30 Da        Isoelectric Point: 9.4200

>NTDB_id=131488 BF29_RS09920 WP_013860711.1 1968002..1968361(+) (ssbB) [Heyndrickxia coagulans DSM]
MINQVTLVGRLTKDPDLHYTADGKPVLNITLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQETGQGG

Nucleotide


Download         Length: 360 bp        

>NTDB_id=131488 BF29_RS09920 WP_013860711.1 1968002..1968361(+) (ssbB) [Heyndrickxia coagulans DSM]
TTGATTAACCAGGTCACATTAGTCGGAAGGCTCACAAAAGATCCGGATCTTCACTACACAGCAGACGGAAAACCGGTGCT
AAATATTACGCTTGCCTTAAACCGCCATTACCGGAATCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCGGAGAATACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CACTATGATAATAAGGACGGAAAAAGGGTCTACGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAACCGCTGCAGGAAACCGGCCAGGGAGGGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BV61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

92.437

0.555
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

89.076

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

90.756

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

40.678

99.16

0.403
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.678

99.16

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

39.831

99.16

0.395
  ssbB/cilA Streptococcus pneumoniae D39

39.831

99.16

0.395
  ssbB/cilA Streptococcus pneumoniae R6

39.831

99.16

0.395
  ssbB/cilA Streptococcus mitis SK321

39.831

99.16

0.395
  ssbA Streptococcus mutans UA159

40.741

90.756

0.37

Multiple sequence alignment