Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LG36_RS02095 Genome accession   NZ_CP009472
Coordinates   417106..417495 (+) Length   129 a.a.
NCBI ID   WP_038599186.1    Uniprot ID   A0AAP8E400
Organism   Lactococcus lactis strain AI06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 417106..423592 417106..417495 within 0


Gene organization within MGE regions


Location: 417106..423592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS02095 (LG36_0391) ssbB 417106..417495 (+) 390 WP_038599186.1 single-stranded DNA-binding protein Machinery gene
  LG36_RS02100 (LG36_0392) groES 417615..417899 (+) 285 WP_038599188.1 co-chaperone GroES -
  LG36_RS02105 (LG36_0393) groL 417986..419614 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LG36_RS02110 (LG36_0394) - 419659..420471 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase -
  LG36_RS02115 (LG36_0395) - 420642..422084 (-) 1443 WP_052053826.1 cell wall metabolism sensor histidine kinase WalK -
  LG36_RS02120 (LG36_0396) yycF 422077..422778 (-) 702 WP_038599193.1 response regulator YycF -
  LG36_RS02125 (LG36_0397) tmk 422957..423592 (+) 636 WP_038599196.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14702.82 Da        Isoelectric Point: 8.3705

>NTDB_id=129631 LG36_RS02095 WP_038599186.1 417106..417495(+) (ssbB) [Lactococcus lactis strain AI06]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YMDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=129631 LG36_RS02095 WP_038599186.1 417106..417495(+) (ssbB) [Lactococcus lactis strain AI06]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCTTATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAGCGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TACATGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364

Multiple sequence alignment