Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IX91_RS02200 Genome accession   NZ_CP009354
Coordinates   437032..438255 (-) Length   407 a.a.
NCBI ID   WP_004742601.1    Uniprot ID   -
Organism   Vibrio tubiashii ATCC 19109     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432032..443255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS02165 (IX91_02215) rimM 432307..432855 (+) 549 WP_004742594.1 ribosome maturation factor RimM -
  IX91_RS02170 (IX91_02220) trmD 432883..433626 (+) 744 WP_004742595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IX91_RS02175 (IX91_02225) rplS 433668..434021 (+) 354 WP_004742596.1 50S ribosomal protein L19 -
  IX91_RS02180 (IX91_02235) yacG 434462..434656 (-) 195 WP_004742597.1 DNA gyrase inhibitor YacG -
  IX91_RS02185 (IX91_02240) zapD 434719..435459 (-) 741 WP_004742598.1 cell division protein ZapD -
  IX91_RS02190 (IX91_02245) coaE 435494..436102 (-) 609 WP_004742599.1 dephospho-CoA kinase -
  IX91_RS02195 (IX91_02250) pilD 436104..436973 (-) 870 WP_004742600.1 A24 family peptidase Machinery gene
  IX91_RS02200 (IX91_02255) pilC 437032..438255 (-) 1224 WP_004742601.1 type II secretion system F family protein Machinery gene
  IX91_RS02205 (IX91_02260) pilB 438266..439957 (-) 1692 WP_004742602.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IX91_RS02210 (IX91_02265) pilA 439963..440388 (-) 426 WP_004742603.1 pilin Machinery gene
  IX91_RS02215 (IX91_02270) nadC 440632..441519 (-) 888 WP_004742604.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IX91_RS02220 (IX91_02275) ampD 441651..442205 (+) 555 WP_004742605.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IX91_RS02225 (IX91_02280) fldB 442409..442930 (-) 522 WP_004742606.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45188.51 Da        Isoelectric Point: 10.2605

>NTDB_id=128848 IX91_RS02200 WP_004742601.1 437032..438255(-) (pilC) [Vibrio tubiashii ATCC 19109]
MKATSHQLKHYRWKGVNQRGKLVSGSTLALSDNEVKDKLSEQSIRVKSLRRKSLSLVTRLTQRVKKKDITLLTRQLSTML
ATGVPLLQVLKLITLNHPKAEMRSILSYISKEVESGNPLSRSLGAASPLFDSLYTDLVATGEQSGNLAEVLQRIADYREK
SQRLNAKVTKALIYPTMVMITAFAVTYLMLTMVIPQFEAMFAGFGAELPWLTQQVLDLSAWLQTYSGPSLIGLILFLGVI
KLCLTKSYRLQLLFNRALLKIPLLGNILTKAAIAKFSRTLATSFNAGIPILEGIRASAKTVRNQHYHQTIKTAMLDVTAG
MPLYLSLRNSDCFPEMVLQMIMIGEESGRLGEMLHKIADVYEFEIDNTVDNLGKIIEPAIIIFLGIVVGGLIVAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=128848 IX91_RS02200 WP_004742601.1 437032..438255(-) (pilC) [Vibrio tubiashii ATCC 19109]
ATGAAAGCAACATCTCATCAACTCAAACACTATCGCTGGAAGGGGGTTAACCAGCGAGGAAAGCTCGTCTCTGGCTCTAC
GCTCGCCTTAAGTGACAACGAAGTAAAAGATAAGCTGAGTGAGCAATCGATCCGTGTTAAATCTCTAAGAAGAAAGTCAC
TGTCTCTCGTCACTCGCCTAACGCAAAGAGTCAAAAAGAAAGACATCACTTTGCTTACTAGACAATTGAGCACCATGCTT
GCGACCGGAGTGCCACTTCTTCAAGTATTGAAGCTTATTACTCTTAACCACCCCAAAGCGGAGATGAGATCGATCTTAAG
CTACATCAGCAAAGAGGTAGAATCGGGAAACCCGTTATCAAGGAGTCTCGGAGCTGCTAGCCCGCTATTCGATAGCCTTT
ATACCGACCTCGTTGCCACTGGAGAGCAATCTGGCAACTTAGCGGAAGTACTCCAACGTATTGCTGACTATCGGGAAAAA
TCGCAGCGACTCAACGCTAAAGTCACCAAAGCGCTCATCTATCCCACTATGGTGATGATCACGGCTTTCGCAGTTACGTA
TCTAATGCTAACGATGGTGATACCTCAATTTGAAGCGATGTTTGCAGGCTTTGGTGCTGAGCTACCTTGGCTTACCCAAC
AAGTGTTAGACTTATCCGCTTGGCTACAAACCTATTCGGGACCTAGCTTAATTGGATTAATACTGTTCTTAGGGGTCATT
AAGCTCTGTTTAACAAAATCATACCGACTTCAATTACTATTTAATCGTGCCCTACTCAAGATCCCGCTTCTCGGCAACAT
TTTGACTAAAGCGGCAATTGCTAAATTTAGCCGAACACTTGCCACTAGCTTTAACGCCGGAATCCCAATTCTAGAAGGTA
TAAGAGCCTCCGCTAAAACGGTTCGTAACCAGCATTATCATCAAACAATCAAAACGGCTATGCTTGATGTCACTGCAGGT
ATGCCGCTGTATCTTTCACTGCGCAACTCTGACTGTTTTCCCGAAATGGTTTTGCAGATGATAATGATAGGTGAAGAGTC
AGGACGACTCGGGGAAATGCTACACAAAATTGCCGATGTGTATGAGTTTGAGATCGATAACACGGTTGATAACCTTGGTA
AGATCATAGAGCCCGCGATTATCATCTTTCTAGGTATTGTTGTCGGTGGTCTGATTGTCGCAATGTATTTACCTATCTTT
AATTTGATGAGTGTCTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

61.765

100

0.619
  pilC Vibrio campbellii strain DS40M4

58.435

100

0.587
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baylyi ADP1

39.109

99.263

0.388
  pilC Legionella pneumophila strain ERS1305867

37.864

100

0.383
  pilG Neisseria gonorrhoeae MS11

39.276

95.086

0.373
  pilC Acinetobacter baumannii D1279779

37.469

99.017

0.371
  pilG Neisseria meningitidis 44/76-A

38.601

94.84

0.366

Multiple sequence alignment