Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JV59_RS00080 Genome accession   NZ_CP009264
Coordinates   16407..17771 (+) Length   454 a.a.
NCBI ID   WP_080749061.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11407..22771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS00060 (JV59_00060) pilM 13845..14762 (+) 918 WP_038509277.1 pilus assembly protein PilM -
  JV59_RS00065 (JV59_00065) - 14752..15309 (+) 558 WP_038509279.1 PilN domain-containing protein -
  JV59_RS00070 (JV59_00070) pilO 15302..15892 (+) 591 WP_038509281.1 type 4a pilus biogenesis protein PilO -
  JV59_RS00075 (JV59_00075) - 15879..16394 (+) 516 WP_235284653.1 pilus assembly protein PilP -
  JV59_RS00080 (JV59_25955) pilQ 16407..17771 (+) 1365 WP_080749061.1 type IV pilus secretin PilQ family protein Machinery gene
  JV59_RS00085 (JV59_00085) aroK 17948..18466 (+) 519 WP_006957155.1 shikimate kinase AroK -
  JV59_RS00090 (JV59_00090) aroB 18498..19586 (+) 1089 WP_038509286.1 3-dehydroquinate synthase -
  JV59_RS00095 (JV59_00095) - 19628..21130 (+) 1503 WP_038509288.1 SPOR domain-containing protein -
  JV59_RS00100 (JV59_00100) - 21200..22027 (+) 828 WP_038509290.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49315.38 Da        Isoelectric Point: 4.7001

>NTDB_id=127840 JV59_RS00080 WP_080749061.1 16407..17771(+) (pilQ) [Vibrio coralliilyticus strain OCN014]
MVCKRARWFSVLLFGLVVTHNAASSEEMKPELEIEGKVSDKLSVNFQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRV
KEVPWPQLLDIILRMKGLEKRMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAVRFAKAADIAALLSDSAAT
QMLSERGAISIDTRTNSLLIRDVAINIQAMKAIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFNSTNGSHSVGGSI
ENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIE
QGTEIPYLEAASSGATSVNFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVPVNNGET
IVLGGIYQHSVSDTVDQVPLLGDIPLLGALFRRTYQQMGKSELLIFVTPKVVTP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=127840 JV59_RS00080 WP_080749061.1 16407..17771(+) (pilQ) [Vibrio coralliilyticus strain OCN014]
ATGGTTTGTAAGAGAGCAAGGTGGTTCAGTGTGCTGCTGTTTGGTTTGGTGGTTACGCATAATGCAGCAAGCAGTGAGGA
GATGAAGCCTGAACTTGAGATAGAGGGAAAGGTGTCAGACAAGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCAGG
TATTGCAGCAGATTGCGGACTACAACGATTTTAATCTGGTTGTGTCAGATGCCGTGTCTGGCAATCTGACCCTAAGAGTG
AAGGAGGTTCCGTGGCCACAGTTACTCGATATCATTTTGCGTATGAAGGGATTAGAGAAGCGTATGGATGGCAGTGTGTT
GCTGGTGGCAACGGCGGCTGAAATTGCTCAGTTCAGACAACAAAAGTTGGAACAGGAGAAAGTCACGGCTGAGCTTCAAC
CGTTAGAGTCTGAGATCATCGCCGTGAGATTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACG
CAGATGTTGTCTGAACGAGGGGCGATTTCAATCGATACTCGAACCAATAGCCTATTAATTCGCGATGTTGCTATCAATAT
TCAAGCGATGAAGGCGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTACAAATTGAGGCGCGTATAGTCAGCTTGA
ATGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTCAATTCGACAAACGGCAGTCACAGTGTGGGAGGCTCGATA
GAAAATAACTTAGCCAATCTCAATCTGTATGGTGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGC
GACGTCCGTGAATGCCTCGACGATTGCTTTTCAGGTCGCCAAGCTGGGCAGTGACACTTTACTGGATTTAGAACTGTCAG
CGTTACAAAGAGAATCGAGGGCGGAAGTCATATCCAGCCCGCGTCTGATTACGACTAACAAGCAACCTGCTTACATTGAG
CAGGGTACTGAAATTCCTTATTTAGAGGCAGCATCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGCTAAGTTT
AAAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTCGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGG
TCAAAACCGGCACTGGGGAAGCTGTTGCGATAGACACACAACGTATCGGTACTCAGGTGCCGGTCAATAATGGCGAAACC
ATTGTTCTGGGAGGGATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTTCCGTTGTTAGGCGACATTCCTTTGCT
AGGTGCGCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAAAAGTGGTTACGC
CTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(138-203)

Bacterial type II and III secretion system protein (Secretin)

(294-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

69.863

96.476

0.674
  pilQ Vibrio cholerae strain A1552

69.863

96.476

0.674
  pilQ Vibrio campbellii strain DS40M4

69.954

96.035

0.672
  pilQ Legionella pneumophila strain ERS1305867

46.301

92.291

0.427
  pilQ Legionella pneumophila strain Lp02

46.301

92.291

0.427
  comQ Acinetobacter baylyi ADP1

42.438

97.577

0.414
  pilQ Pseudomonas aeruginosa PAK

43.619

94.934

0.414
  pilQ Acinetobacter baumannii D1279779

38.512

100

0.388
  pilQ Acinetobacter baumannii strain A118

38.512

100

0.388
  comE Haemophilus influenzae 86-028NP

42.611

89.427

0.381
  comE Haemophilus influenzae Rd KW20

41.247

91.85

0.379

Multiple sequence alignment