Detailed information NTG0123212

Bioinformatically predicted

Overview

• Name: ctsE
• Type: Machinery gene
• Locus tag: CONCH_RS08105
• Genome accession: NZ_CP007771
• Coordinates: 363673..364386 (+)
• Length: 237 a.a.
• NCBI ID: WP_158336406.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus LMG 11760
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 358673..369386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CONCH_RS07675 (CONCH_0391)	-	360956..361216 (+)	261	WP_148308367.1	hypothetical protein	-
CONCH_RS01965 (CONCH_0392)	ctsD	361188..362579 (+)	1392	WP_039668083.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CONCH_RS01970 (CONCH_0393)	-	362560..362889 (+)	330	WP_052239429.1	transformation system, membrane protein CtsX	-
CONCH_RS08100	-	362882..363676 (+)	795	WP_052239430.1	ATPase, T2SS/T4P/T4SS family	-
CONCH_RS08105	ctsE	363673..364386 (+)	714	WP_158336406.1	GspE/PulE family protein	Machinery gene
CONCH_RS01980 (CONCH_0395)	-	364383..365543 (+)	1161	WP_039668084.1	transformation system, type II secretion system membrane protein CtsF	-
CONCH_RS01985 (CONCH_0396)	-	365540..366292 (-)	753	WP_039668085.1	TSUP family transporter	-
CONCH_RS01990 (CONCH_0397)	-	366277..367026 (-)	750	WP_039668086.1	TIGR02757 family protein	-
CONCH_RS01995 (CONCH_0398)	flgK	367026..368855 (-)	1830	WP_039668087.1	flagellar hook-associated protein FlgK	-
CONCH_RS02000 (CONCH_0399)	-	368866..369300 (-)	435	WP_039668088.1	flagellar protein FlgN	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 26877.49 Da
• Isoelectric Point: 8.8316

>NTDB_id=123212 CONCH_RS08105 WP_158336406.1 363673..364386(+) (ctsE) [Campylobacter lari subsp. concheus LMG 11760]
MILFCGPTGSGKSTFMHAILNEFDQNKKIITLEDPIEYKLKHAQQILLNSKTGFDFHKALRAVLRQDPDVIMVGEIRDEE
SLDIVLKASLSGHLVLSTLHTNGAIEAIFRMKHMGAKEYLIAYALNLIIAQRLVRKLCECKEASDEKFHFQNQVFEGKFY
KAKGCAKCMYSGYKGRLMVAEFLFLDRNLKSMIENNANYENILTYALKKGFLTLGVDALEKVKLGLTSVDELRKIGF

Nucleotide

• Length: 714 bp

>NTDB_id=123212 CONCH_RS08105 WP_158336406.1 363673..364386(+) (ctsE) [Campylobacter lari subsp. concheus LMG 11760]
TTGATTTTATTTTGTGGGCCAACAGGGAGTGGTAAAAGCACTTTTATGCATGCCATTTTAAACGAGTTTGATCAAAATAA
AAAAATCATTACTCTAGAAGATCCTATAGAATATAAACTTAAACATGCTCAGCAAATTTTGTTAAATTCTAAAACCGGTT
TTGATTTTCATAAAGCTTTAAGAGCAGTTTTGAGGCAAGATCCTGATGTGATTATGGTGGGTGAAATCAGAGATGAGGAG
AGTTTGGATATAGTTTTAAAAGCTTCTTTAAGTGGACATTTAGTTTTAAGTACCCTGCATACTAATGGTGCTATAGAAGC
TATTTTTAGAATGAAACATATGGGTGCAAAAGAATATTTAATAGCTTATGCGCTTAATTTGATCATAGCCCAACGTTTGG
TGAGAAAATTATGTGAATGTAAAGAAGCTAGTGATGAAAAATTTCATTTTCAAAATCAAGTTTTTGAAGGAAAATTTTAT
AAAGCAAAGGGTTGTGCTAAGTGTATGTATAGTGGATATAAAGGGCGTTTAATGGTGGCTGAGTTTTTATTTTTGGATCG
TAATTTAAAAAGTATGATAGAAAATAATGCAAATTATGAAAATATTTTAACATATGCTTTAAAAAAAGGCTTTTTGACTT
TAGGTGTGGATGCTTTGGAAAAAGTTAAGCTTGGTTTAACAAGTGTAGATGAGCTAAGAAAGATTGGTTTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (1-136)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsE	Campylobacter jejuni subsp. jejuni 81-176	56.962	100	0.57
pilB	Legionella pneumophila strain ERS1305867	44.8	100	0.473
pilB	Vibrio cholerae strain A1552	43.852	100	0.451
pilB/pilB1	Synechocystis sp. PCC 6803	39.464	100	0.435
pilB	Vibrio parahaemolyticus RIMD 2210633	42.739	100	0.435
pilB	Vibrio campbellii strain DS40M4	41.87	100	0.435
pilB	Acinetobacter baylyi ADP1	40.65	100	0.422
pilF	Neisseria gonorrhoeae MS11	40.741	100	0.418
pilF	Thermus thermophilus HB27	40.664	100	0.414
pilB	Haemophilus influenzae Rd KW20	41.35	100	0.414
pilB	Acinetobacter baumannii D1279779	39.431	100	0.409
pilB	Glaesserella parasuis strain SC1401	40.678	99.578	0.405
pilB	Haemophilus influenzae 86-028NP	40.506	100	0.405
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.256	100	0.401