Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CONCH_RS01965 Genome accession   NZ_CP007771
Coordinates   361188..362579 (+) Length   463 a.a.
NCBI ID   WP_039668083.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus LMG 11760     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356188..367579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CONCH_RS01950 (CONCH_0389) - 356572..357216 (+) 645 WP_039668081.1 HAD family hydrolase -
  CONCH_RS01955 (CONCH_0390) nifJ 357335..360889 (+) 3555 WP_039668082.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CONCH_RS07675 (CONCH_0391) - 360956..361216 (+) 261 WP_148308367.1 hypothetical protein -
  CONCH_RS01965 (CONCH_0392) ctsD 361188..362579 (+) 1392 WP_039668083.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CONCH_RS01970 (CONCH_0393) - 362560..362889 (+) 330 WP_052239429.1 transformation system, membrane protein CtsX -
  CONCH_RS08100 - 362882..363676 (+) 795 WP_052239430.1 ATPase, T2SS/T4P/T4SS family -
  CONCH_RS08105 ctsE 363673..364386 (+) 714 WP_158336406.1 GspE/PulE family protein Machinery gene
  CONCH_RS01980 (CONCH_0395) - 364383..365543 (+) 1161 WP_039668084.1 transformation system, type II secretion system membrane protein CtsF -
  CONCH_RS01985 (CONCH_0396) - 365540..366292 (-) 753 WP_039668085.1 TSUP family transporter -
  CONCH_RS01990 (CONCH_0397) - 366277..367026 (-) 750 WP_039668086.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52580.46 Da        Isoelectric Point: 7.5661

>NTDB_id=123200 CONCH_RS01965 WP_039668083.1 361188..362579(+) (ctsD) [Campylobacter lari subsp. concheus LMG 11760]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGIKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDDHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123200 CONCH_RS01965 WP_039668083.1 361188..362579(+) (ctsD) [Campylobacter lari subsp. concheus LMG 11760]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAACTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATCTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTATTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATGATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment