Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DK42_RS01220 Genome accession   NZ_CP007571
Coordinates   212573..212968 (+) Length   131 a.a.
NCBI ID   WP_000282446.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207573..217968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS01185 (DK42_01200) proC 207968..208738 (-) 771 WP_001881026.1 pyrroline-5-carboxylate reductase -
  DK42_RS01190 (DK42_01205) pepA 208808..209875 (-) 1068 WP_001281321.1 glutamyl aminopeptidase -
  DK42_RS01195 (DK42_01210) - 210060..210299 (-) 240 WP_000660182.1 hypothetical protein -
  DK42_RS01200 (DK42_01215) - 210460..210744 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  DK42_RS01205 (DK42_01220) - 210741..211064 (+) 324 WP_000602780.1 thioredoxin family protein -
  DK42_RS01210 (DK42_01225) ytpR 211097..211723 (+) 627 WP_000578324.1 YtpR family tRNA-binding protein -
  DK42_RS01215 (DK42_01230) - 211777..212492 (-) 716 Protein_188 methyltransferase domain-containing protein -
  DK42_RS01220 (DK42_01235) ssbA 212573..212968 (+) 396 WP_000282446.1 single-stranded DNA-binding protein Machinery gene
  DK42_RS01225 (DK42_01240) - 213092..213736 (+) 645 WP_000416614.1 HAD family hydrolase -
  DK42_RS01230 (DK42_01245) - 213763..215508 (+) 1746 WP_000930328.1 LytS/YhcK type 5TM receptor domain-containing protein -
  DK42_RS01235 (DK42_01250) - 215489..216229 (+) 741 WP_000697628.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  DK42_RS01240 (DK42_01255) - 216399..216854 (+) 456 WP_000683317.1 CidA/LrgA family protein -
  DK42_RS01245 (DK42_01260) lrgB 216856..217584 (+) 729 WP_000421730.1 antiholin-like protein LrgB -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14735.78 Da        Isoelectric Point: 5.9381

>NTDB_id=121091 DK42_RS01220 WP_000282446.1 212573..212968(+) (ssbA) [Streptococcus agalactiae strain GBS2-NM]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWARLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQCAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=121091 DK42_RS01220 WP_000282446.1 212573..212968(+) (ssbA) [Streptococcus agalactiae strain GBS2-NM]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
ACGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGCTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ATGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

59.649

87.023

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397

Multiple sequence alignment